CX675489 | Citrus Genome Database

Overview


Name	CX675489
Unique Name	CX675489
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	569

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9665	contig	Csv1_Contig9665:348..917.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CDC2A_ANTMA (Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 7.482e-97
Identity = 91/97 (93.81%), Postives = 95/97 (97.94%), Query Frame = 3

Query:    3 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVL 293
            ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK+LYLVFEYLDLDLKKHMDSCP+F+ DPRL+K FLYQILRGIAYCHSHRVL
Sbjct:   28 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSCPEFSQDPRLVKMFLYQILRGIAYCHSHRVL 124

HSP 2 Score: 186.037 bits (471), Expect = 7.482e-97
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN LIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYS PVDVWSVGCIFAEMVNQRPLFPG+SEIDELFKI
Sbjct:  125 HRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKI 216

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CDC2_CHERU (Cell division control protein 2 homolog OS=Chenopodium rubrum GN=CDC2 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.761e-97
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 3

Query:    3 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVL 293
            ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK+LYLVFEYLDLDLKKHMDSCPDFA DPR+IK FLYQILRGIAYCHSHRVL
Sbjct:   28 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSCPDFAKDPRMIKRFLYQILRGIAYCHSHRVL 124

HSP 2 Score: 183.341 bits (464), Expect = 9.761e-97
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN LIDR+TNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYS PVDVWSVGCIFAEMVNQ+PLFPG+SEIDELFKI
Sbjct:  125 HRDLKPQNLLIDRQTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQKPLFPGDSEIDELFKI 216

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CDC2_VIGAC (Cell division control protein 2 homolog OS=Vigna aconitifolia GN=CDC2 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.110e-92
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN LIDRRTN+LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYS PVDVWSVGCIFAEMVN+RPLFPG+SEIDELFKI
Sbjct:  125 HRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNRRPLFPGDSEIDELFKI 216

HSP 2 Score: 175.637 bits (444), Expect = 3.110e-92
Identity = 87/97 (89.69%), Postives = 90/97 (92.78%), Query Frame = 3

Query:    3 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVL 293
            ETIALKKIRLEQEDEGVPSTAIREISLLKEMQH NIVRLQDVVHSEK+LYLVFEYLDLDLKKHMDS P+F  DPR +K FLYQIL GIAYCHSHRVL
Sbjct:   28 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFVKDPRQVKMFLYQILCGIAYCHSHRVL 124

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CDC2_VIGUN (Cell division control protein 2 homolog OS=Vigna unguiculata GN=CDC2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.293e-92
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN LIDRRTN+LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYS PVDVWSVGC+FAEMVN+RPLFPG+SEIDELFKI
Sbjct:  125 HRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCLFAEMVNRRPLFPGDSEIDELFKI 216

HSP 2 Score: 175.637 bits (444), Expect = 5.293e-92
Identity = 87/97 (89.69%), Postives = 90/97 (92.78%), Query Frame = 3

Query:    3 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVL 293
            ETIALKKIRLEQEDEGVPSTAIREISLLKEMQH NIVRLQDVVHSEK+LYLVFEYLDLDLKKHMDS P+F  DPR +K FLYQIL GIAYCHSHRVL
Sbjct:   28 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFVKDPRQVKMFLYQILCGIAYCHSHRVL 124

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CDKA1_ORYSJ (Cyclin-dependent kinase A-1 OS=Oryza sativa subsp. japonica GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.175e-91
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN LIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSR YS PVD+WSVGCIFAEMVNQ+PLFPG+SEIDELFKI
Sbjct:  125 HRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRQYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKI 216

HSP 2 Score: 176.407 bits (446), Expect = 1.175e-91
Identity = 84/97 (86.60%), Postives = 92/97 (94.85%), Query Frame = 3

Query:    3 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVL 293
            ETIALKKIRLEQEDEGVPSTAIREISLLKEM HGNIVRL DV+HSEK++YLVFEYLDLDLKK MDSCP+FA +P LIK++LYQILRG+AYCHSHRVL
Sbjct:   28 ETIALKKIRLEQEDEGVPSTAIREISLLKEMHHGNIVRLHDVIHSEKRIYLVFEYLDLDLKKFMDSCPEFAKNPTLIKSYLYQILRGVAYCHSHRVL 124

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CDC2_MAIZE (Cell division control protein 2 homolog OS=Zea mays GN=CDC2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.403e-91
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN LIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLG+R YS PVDVWSVGCIFAEMVNQ+PLFPG+SEIDELFKI
Sbjct:  125 HRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARQYSTPVDVWSVGCIFAEMVNQKPLFPGDSEIDELFKI 216

HSP 2 Score: 174.866 bits (442), Expect = 3.403e-91
Identity = 84/97 (86.60%), Postives = 91/97 (93.81%), Query Frame = 3

Query:    3 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVL 293
            ETIALKKIRLEQEDEGVPSTAIREISLLKEM HGNIVRL DVVHSEK++YLVFEYLDLDLKK MDSCP+FA +P LIK++LYQIL G+AYCHSHRVL
Sbjct:   28 ETIALKKIRLEQEDEGVPSTAIREISLLKEMNHGNIVRLHDVVHSEKRIYLVFEYLDLDLKKFMDSCPEFAKNPTLIKSYLYQILHGVAYCHSHRVL 124

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CDKA1_ARATH (Cyclin-dependent kinase A-1 OS=Arabidopsis thaliana GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.403e-91
Identity = 82/92 (89.13%), Postives = 89/92 (96.74%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN LIDRRTN+LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGS HYS PVD+WSVGCIFAEM++Q+PLFPG+SEID+LFKI
Sbjct:  125 HRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSHHYSTPVDIWSVGCIFAEMISQKPLFPGDSEIDQLFKI 216

HSP 2 Score: 177.563 bits (449), Expect = 3.403e-91
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 3

Query:    3 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVL 293
            ETIALKKIRLEQEDEGVPSTAIREISLLKEMQH NIV+LQDVVHSEK+LYLVFEYLDLDLKKHMDS PDF+ D  +IKT+LYQILRGIAYCHSHRVL
Sbjct:   28 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHSNIVKLQDVVHSEKRLYLVFEYLDLDLKKHMDSTPDFSKDLHMIKTYLYQILRGIAYCHSHRVL 124

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CDKA2_ORYSJ (Cyclin-dependent kinase A-2 OS=Oryza sativa subsp. japonica GN=CDKA-2 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.857e-90
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN LIDRRTN+LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLG+RHYS PVD+WSVGCIFAEMVNQ+PLFPG+SEIDELFKI
Sbjct:  124 HRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARHYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKI 215

HSP 2 Score: 170.244 bits (430), Expect = 4.857e-90
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 3

Query:    3 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVL 293
            ETIALKKIRLEQEDEGVPSTAIREISLLKEMQH NIVRLQDVVH EK +YLVFEYLDLDLKKHMDS PDF N  R++K+FLYQILRGIAYCHSHRVL
Sbjct:   28 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHKEKCIYLVFEYLDLDLKKHMDSSPDFKNH-RIVKSFLYQILRGIAYCHSHRVL 123

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CDC22_MEDSA (Cell division control protein 2 homolog 2 OS=Medicago sativa GN=CDC2B PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.857e-90
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN LIDR +NA+KLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYS PVDVWSVGCIFAEM+NQRPLFPG+SEIDELFKI
Sbjct:  125 HRDLKPQNLLIDRSSNAVKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMINQRPLFPGDSEIDELFKI 216

HSP 2 Score: 171.014 bits (432), Expect = 4.857e-90
Identity = 87/97 (89.69%), Postives = 89/97 (91.75%), Query Frame = 3

Query:    3 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVL 293
            ETIALKKIRLEQEDEGVPSTAIREISLLKEMQH NIVRLQDVVHSEK+LYLVFEYLDLDLKK MDS P+FA D R IK FLYQIL GIAYCHSHRVL
Sbjct:   28 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKFMDSSPEFAKDQRQIKMFLYQILCGIAYCHSHRVL 124

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CDC21_MEDSA (Cell division control protein 2 homolog 1 (Fragment) OS=Medicago sativa GN=CDC2A PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.857e-90
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN LIDRRTN+LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYS PVDVWSVGCIFAEM N+RPL PG+SEIDELFKI
Sbjct:  122 HRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMANRRPLSPGDSEIDELFKI 213

HSP 2 Score: 172.94 bits (437), Expect = 4.857e-90
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 3

Query:    3 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVL 293
            ETIALKKIRLEQEDEGVPSTAIREISLLKEMQH NIVRLQDVVHS+K+LYLVFEYLDLDLKKHMDS P+F  DPR +K FLYQ+L GIAYCHSHRVL
Sbjct:   25 ETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSDKRLYLVFEYLDLDLKKHMDSSPEFIKDPRQVKMFLYQMLCGIAYCHSHRVL 121

The following BLAST results are available for this feature:

BLAST of CX675489 vs. ExPASy Swiss-Prot

BLAST of CX675489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CDC2A_ANTMA	7.482e-97	93.81	Cell division control protein 2 homolog A OS=Antir...	[more]
CDC2_CHERU	9.761e-97	95.88	Cell division control protein 2 homolog OS=Chenopo...	[more]
CDC2_VIGAC	3.110e-92	94.57	Cell division control protein 2 homolog OS=Vigna a...	[more]
CDC2_VIGUN	5.293e-92	93.48	Cell division control protein 2 homolog OS=Vigna u...	[more]
CDKA1_ORYSJ	1.175e-91	93.48	Cyclin-dependent kinase A-1 OS=Oryza sativa subsp....	[more]
CDC2_MAIZE	3.403e-91	93.48	Cell division control protein 2 homolog OS=Zea may...	[more]
CDKA1_ARATH	3.403e-91	89.13	Cyclin-dependent kinase A-1 OS=Arabidopsis thalian...	[more]
CDKA2_ORYSJ	4.857e-90	92.39	Cyclin-dependent kinase A-2 OS=Oryza sativa subsp....	[more]
CDC22_MEDSA	4.857e-90	92.39	Cell division control protein 2 homolog 2 OS=Medic...	[more]
CDC21_MEDSA	4.857e-90	92.39	Cell division control protein 2 homolog 1 (Fragmen...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS08_62E12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E12-J24-1-5.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX675489 ID=CX675489; Name=CX675489; organism=Citrus sinensis; type=EST; length=569bp
ATGAGACAATAGCATTGAAGAAGATCCGCCTTGAGCAGGAAGATGAAGGT
GTGCCTAGCACCGCAATTAGAGAAATTTCCCTCTTGAAAGAAATGCAGCA
TGGGAACATTGTTAGGTTGCAAGATGTAGTGCATAGCGAGAAGAAACTTT
ATCTGGTTTTCGAGTATTTGGACTTGGATTTGAAGAAGCACATGGATTCT
TGCCCAGATTTTGCTAATGATCCGCGTCTGATAAAAACATTCCTTTATCA
AATTCTACGTGGCATTGCCTACTGCCATTCTCACCGGGTTCTCATCGAGA
TTTGAAACCACAAAATTGGCTGATAGATCGTCGTACGAATGCACTAAAGC
TAGCAGATTTTGGACTGGCCAGGGCTTTTGGTATTCCTGTTAGGACATTT
ACACATGAGGTGGTGACATTGTGGTACAGAGCACCTGAAATATTACTAGG
ATCTCGCCATTACTCTGCTCCGGTTGATGTGTGGTCGGTGGGATGTATAT
TTGCTGAGATGGTGAACCAGCGGCCATTGTTTCCAGGAAACTCTGAGATT
GATGAGTTATTCAAGATCT