CK938397

Overview
NameCK938397
Unique NameCK938397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10620 contig Csv1_Contig10620:6..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938397 vs. ExPASy Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.434e-24
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = 2
Query:  149 RLQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKLGHQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNSGCNLEYRGFVSILDTPKSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCIL 559
            +L G+V               +LF K+GA+VV+AD+QD LG +L  +LG     Y+HCDV+NE +V   VD  VA+FGKLD++ N+   +       + +  K D ER+LAVN +G FL  KHAARVM P RRG I+
Sbjct:   14 KLVGKVAVITGGASGIGACTARLFVKHGARVVVADIQDELGASLVAELGPDASSYVHCDVTNEGDVAAAVDHAVARFGKLDVMFNN-AGVSGPPCFRMSECTKEDFERVLAVNLVGPFLGTKHAARVMAPARRGSII 149          
BLAST of CK938397 vs. ExPASy Swiss-Prot
Match: TS2_MAIZE (Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.535e-17
Identity = 57/140 (40.71%), Postives = 79/140 (56.43%), Query Frame = 2
Query:  149 RLQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKLGHQDVCYIHCDVSNEREVINLVDTTVAKFG-KLDILVNSGCNL--EYRGFVSILDTPKSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCIL 559
            RL G+V               +LF K+GA+VVIAD+ D  G+ALA  LG Q V ++ CDVS E +V   VD  +++ G +LD+  N+   L  + R   SIL    ++ +R+L VN +G  L  KHAAR M PRR G I+
Sbjct:   52 RLDGKVAIVTGGARGIGEAIVRLFAKHGARVVIADIDDAAGEALASALGPQ-VSFVRCDVSVEDDVRRAVDWALSRHGGRLDVYCNNAGVLGRQTRAARSILSFDAAEFDRVLRVNALGAALGMKHAARAMAPRRAGSIV 190          
BLAST of CK938397 vs. ExPASy Swiss-Prot
Match: ABA2_ARATH (Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.448e-16
Identity = 55/143 (38.46%), Postives = 73/143 (51.05%), Query Frame = 2
Query:  143 SIRLQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKL----GHQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNSGCNLEYRGFVSILDTPKSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCIL 559
            S RL G+V               +LFHK+GAKV I D+QD+LG  +   L      +   +IH DV  E ++ N VD  V  FG LDIL+N+   L       I +   S+ E    VN  G FL  KHAARVM+P ++G I+
Sbjct:   15 SQRLLGKVALITGGATGIGESIVRLFHKHGAKVCIVDLQDDLGGEVCKSLLRGESKETAFFIHGDVRVEDDISNAVDFAVKNFGTLDILINNA-GLCGAPCPDIRNYSLSEFEMTFDVNVKGAFLSMKHAARVMIPEKKGSIV 156          
BLAST of CK938397 vs. ExPASy Swiss-Prot
Match: Y019_THEMA (Uncharacterized oxidoreductase TM_0019 OS=Thermotoga maritima GN=TM_0019 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.487e-12
Identity = 43/138 (31.16%), Postives = 73/138 (52.90%), Query Frame = 2
Query:  152 LQGRVXXXXXXXXXXXXXXXQLFHKNGAKVVIADVQDNLGQALADKLGHQ--DVCYIHCDVSNEREVINLVDTTVAKFGKLDILVNSGCNLEYRGFVSILDTPKSDLERLLAVNTIGGFLVAKHAARVMVPRRRGCIL 559
            L+G+V               QLF +NG KVVIA++ +  G    + L  +  DV ++  DV++E  V N+V  TV  +G +D+LVN+   +  +   SI + P  + ER++ VN  G ++ +++ A  M+ R  G I+
Sbjct:    2 LEGKVAVVTGGGQGIGAAIAQLFAENGMKVVIAEIDEEAGVEREEMLRERGLDVTFVKTDVADENSVKNMVRKTVEIYGGVDVLVNNAAVMSVK---SIFERPLEEWERVIRVNLTGPYICSRYCAEEMIKRGGGVII 136          
The following BLAST results are available for this feature:
BLAST of CK938397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MOMAS_ORYSJ6.434e-2443.80Momilactone A synthase OS=Oryza sativa subsp. japo... [more]
TS2_MAIZE1.535e-1740.71Sex determination protein tasselseed-2 OS=Zea mays... [more]
ABA2_ARATH6.448e-1638.46Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN... [more]
Y019_THEMA1.487e-1231.16Uncharacterized oxidoreductase TM_0019 OS=Thermoto... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004443_C02 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938397 ID=CK938397; Name=CK938397; organism=Citrus sinensis; type=EST; length=598bp
GGGACACTGCCAAGTGAANNNAATAATCACAAGCCAAACCTTTTCTTTTA
ACAATCTTGATTGAGTTTCAGGTTTTTGAGGAAATTTTTTTACACAGGCT
TGTAGTACTACTGCAGCAGCACCCTGCGAAAGGTATCAACTAAGCATTCG
GTTACAAGGCAGAGTGGCAATCATTACTGGCGGAGCAAGCGGGATCGGAG
CATCTGCGGCTCAGCTTTTCCACAAAAATGGAGCCAAAGTTGTCATAGCC
GATGTGCAAGATAATCTTGGCCAAGCCCTAGCCGATAAGCTAGGCCACCA
GGATGTCTGCTACATCCATTGTGATGTATCAAATGAAAGGGAAGTCATCA
ATCTTGTTGATACCACCGTTGCTAAATTCGGAAAGCTCGACATCCTGGTC
AATAGCGGATGCAATCTTGAGTATCGTGGCTTCGTGAGCATTTTGGACAC
CCCAAAGTCCGATCTAGAACGTTTACTGGCTGTGAACACAATTGGTGGTT
TCTTAGTAGCCAAGCATGCTGCAAGAGTCATGGTGCCACGCCGCAGAGGT
TGCATATTGTATACAACGGGTACAGGCACTACTGCTTGTACGGAAATT
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