CK938395

Overview
NameCK938395
Unique NameCK938395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8171 contig Csv1_Contig8171:499..1285. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_CITUN (V-type proton ATPase catalytic subunit A OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 420.239 bits (1079), Expect = 6.193e-117
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDETR 623
            GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDETR
Sbjct:  417 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDETR 623          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_ARATH (V-type proton ATPase catalytic subunit A OS=Arabidopsis thaliana GN=VHA-A PE=2 SV=1)

HSP 1 Score: 403.29 bits (1035), Expect = 7.835e-112
Identity = 198/207 (95.65%), Postives = 202/207 (97.58%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDETR 623
            GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYE+FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVE+ AGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGE  LV KFKKL++DL AGFRALEDETR
Sbjct:  417 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEKFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERAAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEDTLVEKFKKLYDDLNAGFRALEDETR 623          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_PHAAU (V-type proton ATPase catalytic subunit A OS=Phaseolus aureus PE=1 SV=3)

HSP 1 Score: 400.979 bits (1029), Expect = 3.888e-111
Identity = 196/207 (94.69%), Postives = 202/207 (97.58%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDETR 623
            GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVE+GAG DGQKITY+LIKHR+GDLFYRLVSQKFEDPAEGE ALV +F+KLHEDL+ GFR LEDETR
Sbjct:  417 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGSDGQKITYSLIKHRVGDLFYRLVSQKFEDPAEGEAALVGQFQKLHEDLSTGFRNLEDETR 623          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_BRANA (V-type proton ATPase catalytic subunit A OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 398.667 bits (1023), Expect = 1.930e-110
Identity = 195/207 (94.20%), Postives = 202/207 (97.58%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDETR 623
            GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYE+FD DFI+IRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVE+GAGMDGQKI+Y+LIKHRLGDLFYRLVSQKFEDPAEGE  LV KFKKLH+DLT+GFR LEDETR
Sbjct:  417 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEKFDSDFIDIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKISYSLIKHRLGDLFYRLVSQKFEDPAEGEDVLVGKFKKLHDDLTSGFRNLEDETR 623          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_DAUCA (V-type proton ATPase catalytic subunit A OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 397.127 bits (1019), Expect = 5.615e-110
Identity = 195/207 (94.20%), Postives = 201/207 (97.10%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDETR 623
            GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYE+FD DFI+IRTKAREVLQREDDLNEIVQLVGKDALAE DKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVE+GAGMDGQKI+YTLIKHRLGDLFYRLVSQKFEDPAEGE  LV KFKKLH+DLT+GFR LEDETR
Sbjct:  417 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEKFDSDFIDIRTKAREVLQREDDLNEIVQLVGKDALAETDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKISYTLIKHRLGDLFYRLVSQKFEDPAEGEDVLVGKFKKLHDDLTSGFRNLEDETR 623          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_GOSHI (V-type proton ATPase catalytic subunit A OS=Gossypium hirsutum GN=CVA69.24 PE=2 SV=1)

HSP 1 Score: 394.43 bits (1012), Expect = 3.639e-109
Identity = 196/207 (94.69%), Postives = 201/207 (97.10%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDETR 623
            GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYS ALESFYE+FDPDFI+IRTKAREVLQREDDLNEIVQLVGKDALAE DKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNI+HF  LANQAVEK AGMDGQKITY+LIKHRLGDLFYRLVSQKFEDPAEGE ALVAKFKKL+EDLTAGFRALEDETR
Sbjct:  417 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSGALESFYEKFDPDFISIRTKAREVLQREDDLNEIVQLVGKDALAETDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIVHFNALANQAVEKAAGMDGQKITYSLIKHRLGDLFYRLVSQKFEDPAEGEEALVAKFKKLNEDLTAGFRALEDETR 623          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_BETVU (V-type proton ATPase catalytic subunit A OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.431e-105
Identity = 191/207 (92.27%), Postives = 198/207 (95.65%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDETR 623
            GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYS ALESFYE+FD +FI+IRTKAREVLQREDDLNEIVQLVGKDALAE DKITL+TAKLLREDYLAQNAFT YDKFCPFYKSVWMMRNIIHFYNLANQAVE+GAG DGQKITY+LIK RLGDLFYRLVSQKFEDPAEGE ALVAKFKKL+EDLTA FR LEDETR
Sbjct:  417 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSGALESFYEKFDSEFIDIRTKAREVLQREDDLNEIVQLVGKDALAETDKITLDTAKLLREDYLAQNAFTAYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGSDGQKITYSLIKLRLGDLFYRLVSQKFEDPAEGEDALVAKFKKLNEDLTAAFRNLEDETR 623          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_MAIZE (V-type proton ATPase catalytic subunit A (Fragment) OS=Zea mays PE=2 SV=1)

HSP 1 Score: 382.104 bits (980), Expect = 1.869e-105
Identity = 188/207 (90.82%), Postives = 195/207 (94.20%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDETR 623
            GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYS ALESFYE+FDPDFI+IRTKAREVLQREDDLNEIVQLVGKDALAE DKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHF  LANQAVE+ AG DG KITY++IKHRLGDLFYRLVSQKFEDPAEGE ALV KFKKL++DLT GFR LEDE R
Sbjct:  355 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSKALESFYEKFDPDFIDIRTKAREVLQREDDLNEIVQLVGKDALAESDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFNTLANQAVERAAGTDGHKITYSVIKHRLGDLFYRLVSQKFEDPAEGEEALVGKFKKLYDDLTTGFRNLEDEAR 561          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_HORVU (V-type proton ATPase catalytic subunit A (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 3.648e-101
Identity = 179/207 (86.47%), Postives = 191/207 (92.27%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDETR 623
            GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALE +YE+FDP FI++RTKAREVLQREDDLNEIVQLVGKDAL E DKITLETAKLLREDYLAQNAFTPYDK+CPFYKSVWMMRNIIHF  LANQAVE+ A  DG KITY ++K R+GDLFYRLVSQKFEDPAEGE  LVAKF+KL++DLTAGFR LEDE R
Sbjct:  374 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALEGYYEKFDPGFIDMRTKAREVLQREDDLNEIVQLVGKDALGESDKITLETAKLLREDYLAQNAFTPYDKYCPFYKSVWMMRNIIHFNQLANQAVERAANADGHKITYAVVKSRMGDLFYRLVSQKFEDPAEGEDVLVAKFQKLYDDLTAGFRNLEDEAR 580          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA1_ACEAT (V-type proton ATPase catalytic subunit A isoform 1 OS=Acetabularia acetabulum PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.103e-81
Identity = 149/209 (71.29%), Postives = 174/209 (83.25%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA--GMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDETR 623
            GGDFSDPVTSATL IVQVFWGLDKKLAQRKHFPSVNWLISYSKY  ALE FYE+FD DF+ +R  AREVLQ+ED+LNEIVQLVGKDALAE DKI LETA+ L+EDYL QN+FT YDK+CPFYKSV MMRNI+ F+ LA QA+E+ A   +DGQKIT+ +IK +LGDL Y++ SQKFEDP++GE  + A   +L+E+L   FRALEDE R
Sbjct:  405 GGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYLNALEPFYEKFDSDFVTLRQVAREVLQKEDELNEIVQLVGKDALAESDKIILETARFLKEDYLQQNSFTKYDKYCPFYKSVGMMRNIVTFHRLATQAIERTAAGNVDGQKITFNIIKAKLGDLLYKVSSQKFEDPSDGEGVVTAHLNELNEELKEKFRALEDEYR 613          
The following BLAST results are available for this feature:
BLAST of CK938395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
VATA_CITUN6.193e-117100.00V-type proton ATPase catalytic subunit A OS=Citrus... [more]
VATA_ARATH7.835e-11295.65V-type proton ATPase catalytic subunit A OS=Arabid... [more]
VATA_PHAAU3.888e-11194.69V-type proton ATPase catalytic subunit A OS=Phaseo... [more]
VATA_BRANA1.930e-11094.20V-type proton ATPase catalytic subunit A OS=Brassi... [more]
VATA_DAUCA5.615e-11094.20V-type proton ATPase catalytic subunit A OS=Daucus... [more]
VATA_GOSHI3.639e-10994.69V-type proton ATPase catalytic subunit A OS=Gossyp... [more]
VATA_BETVU1.431e-10592.27V-type proton ATPase catalytic subunit A OS=Beta v... [more]
VATA_MAIZE1.869e-10590.82V-type proton ATPase catalytic subunit A (Fragment... [more]
VATA_HORVU3.648e-10186.47V-type proton ATPase catalytic subunit A (Fragment... [more]
VATA1_ACEAT1.103e-8171.29V-type proton ATPase catalytic subunit A isoform 1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004443_D11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938395 ID=CK938395; Name=CK938395; organism=Citrus sinensis; type=EST; length=787bp
GGGGAGGAGATTTCTCAGATCCTGTAACATCTGCCACCCTCAGCATTGTG
CAGGTCTTCTGGGGTCTGGATAAGAAACTTGCGCAGAGAAAGCATTTTCC
TTCTGTAAACTGGCTTATTTCTTACTCGAAGTATTCAACAGCATTAGAGT
CTTTCTATGAGCAATTTGATCCGGATTTTATTAACATCAGGACAAAGGCT
AGAGAGGTGCTGCAGAGAGAAGATGACCTGAATGAAATTGTGCAACTTGT
CGGAAAGGATGCTTTGGCTGAAGGAGATAAGATTACGCTAGAGACTGCTA
AGCTTTTGAGGGAGGACTATCTTGCTCAGAACGCATTTACTCCATATGAC
AAGTTCTGCCCTTTCTACAAGTCTGTTTGGATGATGCGTAACATTATCCA
TTTCTATAACTTGGCCAATCAGGCCGTAGAGAAAGGAGCTGGTATGGATG
GTCAGAAGATAACTTACACCCTTATCAAGCATCGGCTGGGAGATCTATTT
TACAGATTAGTATCACAGAAGTTTGAGGACCCAGCAGAAGGAGAACCAGC
TCTGGTTGCTAAATTCAAAAAGCTGCACGAGGATCTGACCGCTGGTTTCC
GCGCCCTCGAGGATGAAACTCGATGATTGAAAGTGTCAAGTTAGATTCTT
TGTAGTCCCAGCGGCACCTCTGATCTTACGGTAACAACAGTTGGCTTCTC
AATGTTCCATTGAATGGAGAACCAAAATGTTGGTGGGTCCATGTTATGCC
ACTTTGCAGTGCTTGTTTGGCCTTCTAGTTGCANNNT
back to top