CK938391

Overview
NameCK938391
Unique NameCK938391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938391_ssr402 microsatellite CK938391_ssr402:402..413. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK938391 vs. ExPASy Swiss-Prot
Match: MFT_ARATH (Protein MOTHER of FT and TF 1 OS=Arabidopsis thaliana GN=MFT PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.982e-31
Identity = 65/117 (55.56%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  481 LSCHMLSVFL*VMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVR 831
            +S H   ++  VM DPDAPSPSEP  REW+HWIVVDIP G++ ++GKE++ YM P+PP GIHRY+  LF Q   V    + P +R+NFSTR FA    L  PVA VYFN+QKE A R
Sbjct:   55 ISGHSDELYTLVMTDPDAPSPSEPNMREWVHWIVVDIPGGTNPSRGKEILPYMEPRPPVGIHRYILVLFRQNSPVGLMVQQPPSRANFSTRMFAGHFDLGLPVATVYFNAQKEPASR 171          

HSP 2 Score: 81.6481 bits (200), Expect = 5.794e-15
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  120 MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVRTE 335
            MA S++PLVVGRVIGDV+DMF P   M+V++G K + NGCEIKPS + + P V I      S  LYTLV T+
Sbjct:    1 MAASVDPLVVGRVIGDVLDMFIPTANMSVYFGPKHITNGCEIKPSTAVNPPKVNISG---HSDELYTLVMTD 69          
BLAST of CK938391 vs. ExPASy Swiss-Prot
Match: CET1_TOBAC (CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.018e-27
Identity = 58/113 (51.33%), Postives = 77/113 (68.14%), Query Frame = 1
Query:  493 MLSVFL*VMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVR 831
            M S +  +M DPD P PS+P  RE LHWIV DIP  +D++ G+E+V+Y  P+P  GIHRYV  L+ Q G+     +P   R +F+TRR+ A+NGL  PVAAVYFN+Q+E A R
Sbjct:   62 MRSAYTLIMTDPDVPGPSDPYLREHLHWIVTDIPGSTDSSFGREIVSYESPKPVIGIHRYVLLLYKQSGRQTV--KPAATRDHFNTRRYTAENGLGSPVAAVYFNAQRETAAR 172          
BLAST of CK938391 vs. ExPASy Swiss-Prot
Match: BFT_ARATH (Protein BROTHER of FT and TFL 1 OS=Arabidopsis thaliana GN=BFT PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.962e-27
Identity = 61/111 (54.95%), Postives = 78/111 (70.27%), Query Frame = 1
Query:  499 SVFL*VMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVR 831
            S F  +M+DPDAPSPS P  RE+LHW+V DIP  +DA+ G+E+V Y  P+P  GIHRYVFALF Q+G+  A    P+ R  F+T  F++  GL  PVAAVYFN+Q+E A R
Sbjct:   63 SFFTLIMMDPDAPSPSNPYMREYLHWMVTDIPGTTDASFGREIVRYETPKPVAGIHRYVFALFKQRGR-QAVKAAPETRECFNTNAFSSYFGLSQPVAAVYFNAQRETAPR 172          
BLAST of CK938391 vs. ExPASy Swiss-Prot
Match: CEN_ANTMA (Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.295e-26
Identity = 60/114 (52.63%), Postives = 75/114 (65.79%), Query Frame = 1
Query:  493 MLSVFL*VMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPP-DARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVR 831
            M S F  +M DPD P PS+P  RE LHWIV DIP  +D++ GKE+V+Y  P+P  GIHR+VF LF QK +  A   PP   R  F+TR+F  +N L  PVAAV+FN Q+E A R
Sbjct:   66 MRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAAR 179          
BLAST of CK938391 vs. ExPASy Swiss-Prot
Match: CET2_TOBAC (CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.244e-25
Identity = 59/111 (53.15%), Postives = 73/111 (65.77%), Query Frame = 1
Query:  499 SVFL*VMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVR 831
            S F  +M+DPD P PS+P  RE LHWIV DIP  +D + GKE+V Y  P+P  GIHR+VF LF QK K       P +R  F+TR+FA +N L  PVAAV+FN Q+E A R
Sbjct:   64 SFFTMIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGKEIVGYEMPRPNIGIHRFVFLLFKQK-KRQTVLTAPLSRDRFNTRKFAEENELGSPVAAVFFNCQRETAAR 173          
BLAST of CK938391 vs. ExPASy Swiss-Prot
Match: TFL1_ARATH (Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana GN=TFL1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.053e-24
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 1
Query:  499 SVFL*VMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVR 831
            S F  VM+DPD P PS+P  +E LHWIV +IP  +DAT GKE+V+Y  P+P  GIHR+VF LF QK + +     P +R +F+TR+FA +  L  PVAAV+FN+Q+E A R
Sbjct:   66 SFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIP-SRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAAR 175          

HSP 2 Score: 70.4774 bits (171), Expect = 1.336e-11
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  126 RSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIH 287
            R +EPL++GRV+GDV+D FTP T+M V Y  KQV+NG E+ PS+ + KP V+IH
Sbjct:    7 RVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIH 60          
BLAST of CK938391 vs. ExPASy Swiss-Prot
Match: SELFP_SOLLC (Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.053e-24
Identity = 57/111 (51.35%), Postives = 73/111 (65.77%), Query Frame = 1
Query:  499 SVFL*VMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVR 831
            S F  +M+DPD P PS+P  RE LHWIV DIP  +D + G+E+V Y  P+P  GIHR+VF LF QK K       P +R  FS+R+F+ +N L  PVAAV+FN Q+E A R
Sbjct:   64 SFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREVVGYEMPRPNIGIHRFVFLLFKQK-KRQTISSAPVSRDQFSSRKFSEENELGSPVAAVFFNCQRETAAR 173          
BLAST of CK938391 vs. ExPASy Swiss-Prot
Match: CEN_ARATH (Protein CENTRORADIALIS-like OS=Arabidopsis thaliana GN=CEN PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.797e-24
Identity = 59/115 (51.30%), Postives = 74/115 (64.35%), Query Frame = 1
Query:  493 MLSVFL*VMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFALFNQ--KGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVR 831
            M S F  VM DPD P PS+P  RE LHWIV DIP  +D + GKE++ Y  P+P  GIHR+V+ LF Q  +G V++    P  R  F+TR FA +N L  PVAAV+FN Q+E A R
Sbjct:   62 MRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDVSFGKEIIGYEMPRPNIGIHRFVYLLFKQTRRGSVVS---VPSYRDQFNTREFAHENDLGLPVAAVFFNCQRETAAR 173          
BLAST of CK938391 vs. ExPASy Swiss-Prot
Match: CET4_TOBAC (CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.347e-24
Identity = 56/111 (50.45%), Postives = 72/111 (64.86%), Query Frame = 1
Query:  499 SVFL*VMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVR 831
            S F  +M+DPD P PS+P  RE LHWIV DIP  +D + G+E+V Y  P+P  GIHR+VF LF QK K       P +R  F+TR+F+ +N L  PVAA +FN Q+E A R
Sbjct:   64 SFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREIVGYEMPRPNIGIHRFVFLLFKQK-KRQTLLSAPLSRDRFNTRKFSEENELGSPVAAAFFNCQRETAAR 173          
BLAST of CK938391 vs. ExPASy Swiss-Prot
Match: FT_ARATH (Protein FLOWERING LOCUS T OS=Arabidopsis thaliana GN=FT PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.682e-22
Identity = 54/102 (52.94%), Postives = 63/102 (61.76%), Query Frame = 1
Query:  514 VMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKGKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE 819
            VMVDPD PSPS P  RE+LHW+V DIP  +  T G E+V Y  P P  GIHR VF LF Q G+       P  R NF+TR FA    L  PVAAV++N Q+E
Sbjct:   68 VMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVCYENPSPTAGIHRVVFILFRQLGRQTV--YAPGWRQNFNTREFAEIYNLGLPVAAVFYNCQRE 167          
The following BLAST results are available for this feature:
BLAST of CK938391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
MFT_ARATH1.982e-3155.56Protein MOTHER of FT and TF 1 OS=Arabidopsis thali... [more]
CET1_TOBAC1.018e-2751.33CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE... [more]
BFT_ARATH2.962e-2754.95Protein BROTHER of FT and TFL 1 OS=Arabidopsis tha... [more]
CEN_ANTMA7.295e-2652.63Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN... [more]
CET2_TOBAC1.244e-2553.15CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE... [more]
TFL1_ARATH1.053e-2452.25Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana ... [more]
SELFP_SOLLC1.053e-2451.35Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP... [more]
CEN_ARATH1.797e-2451.30Protein CENTRORADIALIS-like OS=Arabidopsis thalian... [more]
CET4_TOBAC2.347e-2450.45CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE... [more]
FT_ARATH1.682e-2252.94Protein FLOWERING LOCUS T OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_D07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938391 ID=CK938391; Name=CK938391; organism=Citrus sinensis; type=EST; length=833bp
GGGGACGGGGAGGGAGAACGCAACGAACACATTCCATTTTATTTCTGGGA
GTCCAGGGTGATCGGTTTGAAATTGAAGAGAAAAGAAAATTACTAGTCAC
AAGAAAGAAGCACGTCGACATGGCGCGGTCTATGGAGCCACTGGTTGTTG
GGAGAGTGATTGGAGATGTAGTTGACATGTTCACTCCAGCCACTGAAATG
ACGGTCCATTATGGGACTAAACAGGTTGCCAACGGCTGTGAGATCAAGCC
CTCTGCTTCTGCTGACAAGCCCAGCGTCCAAATTCATGCTCCTCCTCCTG
CCTCTTCCAATCTCTACACACTTGTGAGAACCGAATTAAGCCGCTAAACT
TTTTATTTTAATTCTCTGTTTCTTTTCTTTATTTCTCTAATATTAAACGC
GTCTTTCTTTCTTTCTCTTCTTTTCGTTTTGTCTATTACTTCTTCAAGCT
AAAGCTTGATTTTTTATTTGGCAATTTATTTTGTCATGTCATATGCTCTC
TGTATTTTTATAGGTTATGGTGGATCCCGATGCTCCAAGTCCGAGCGAAC
CCAGATACAGAGAGTGGCTCCATTGGATTGTTGTAGATATTCCAGAAGGA
TCAGATGCCACCAAAGGAAAAGAGTTGGTGGCATACATGGGACCCCAGCC
ACCCACCGGAATCCACCGCTATGTGTTTGCGCTCTTCAATCAGAAGGGTA
AAGTGATGGCCGGTTGTCGACCTCCCGACGCTCGCAGTAATTTCAGCACC
CGCCGATTTGCTGCTGACAATGGCCTTCAGCCTCCAGTTGCTGCTGTCTA
TTTTAATTCACAGAAAGAAGTTGCTGTCAGAAA
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