CX675488

Overview
NameCX675488
Unique NameCX675488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:414..1081. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.868e-66
Identity = 125/148 (84.46%), Postives = 136/148 (91.89%), Query Frame = -3
Query:  223 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 666
            SN+FVGDKVAYALSQGLKV ACVGETLE+RESGST+ VVA QTKAIA+++ +W NVV+AYEPVWAIGTGKVA+PAQAQEVHAELRKWL  NVS EVAASTRII GGSVNGANCKEL  QPDVDGFLVGGASLKPEFIDIIK+A VK+N
Sbjct:  106 SNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLKPEFIDIIKAAEVKRN 253          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.090e-65
Identity = 121/148 (81.76%), Postives = 136/148 (91.89%), Query Frame = -3
Query:  223 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 666
            SN+FVGDK AYALSQGLKV ACVGETLEQRE+GST++VVA QTKAIAEK+S+W N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKW+K+NV A+VA S RII GGSVNGAN KELA QPD+DGFLVGGASLKPEF+DIIKSATVK +
Sbjct:  106 SNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLKPEFVDIIKSATVKSS 253          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.428e-65
Identity = 124/148 (83.78%), Postives = 137/148 (92.57%), Query Frame = -3
Query:  223 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 666
            +N+FVGDKVAYALSQGLKV ACVGETLEQRE+G+T+ VVA QTKAIA+KIS+WDNVVLAYEPVWAIGTGKVA+PAQAQEVHA LRKW  DNVSAEV+ASTRII GGSV+G+NCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKK+
Sbjct:   47 TNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLKPEFIDIIKAAEVKKS 194          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 246.899 bits (629), Expect = 7.065e-65
Identity = 125/146 (85.62%), Postives = 131/146 (89.73%), Query Frame = -3
Query:  229 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 666
            SN+FVGDKVAYALSQGLKV ACVGETLEQRE+GST+ VVA QTKAIAEKI +W NVV+AYEPVWAIGTGKVATPAQAQEVHA LR WLK N S EVA STRII GGSV  ANCKELAAQPDVDGFLVGGASLKPEFIDII +ATVK
Sbjct:  106 SNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 244.973 bits (624), Expect = 2.685e-64
Identity = 125/146 (85.62%), Postives = 132/146 (90.41%), Query Frame = -3
Query:  229 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 666
            SN+FVGDKVAYALSQGLKV ACVGETLEQRESGST+ VVA QTKAI+E+I +W NVV+AYEPVWAIGTGKVATP QAQEVH  LRKWL  NVSAEVA STRII GGSV GANCKELAA+PDVDGFLVGGASLKPEFIDII SATVK
Sbjct:  106 SNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINSATVK 251          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 243.817 bits (621), Expect = 5.981e-64
Identity = 122/146 (83.56%), Postives = 134/146 (91.78%), Query Frame = -3
Query:  229 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 666
            S++FVG+KVAYAL+QGLKV ACVGETLEQRE+GST+ VVAEQTKAIA+KI +W NVV+AYEPVWAIGTGKVA+PAQAQEVHA LR WLK NVS EVA STRII GGSV GA+CKELAAQPDVDGFLVGGASLKPEFIDII +ATVK
Sbjct:  106 SSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 1.332e-63
Identity = 119/148 (80.41%), Postives = 135/148 (91.22%), Query Frame = -3
Query:  223 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 666
            S++FVGDKVAYAL+QGLKV ACVGETLE+RE+GST+ VVA QTKAIA++++NW NVV+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL  NVSA+VAA+TRII GGSVNG NCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKK+
Sbjct:  106 SSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAAEVKKS 253          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 236.498 bits (602), Expect = 9.549e-62
Identity = 120/146 (82.19%), Postives = 130/146 (89.04%), Query Frame = -3
Query:  229 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 666
            S++FVG+KVAYAL+QGLKV ACVGETLEQRE+GST+ VVAEQTKAIA KI +W N V+AYEPVWAIGTGKVATPAQAQEVHA LR WLK NVS EVA STRII GGSV GA+CKELAAQ DVDGFLVGGASLKPEFIDII +A VK
Sbjct:  106 SSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLKPEFIDIINAAAVK 251          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.382e-52
Identity = 96/142 (67.61%), Postives = 120/142 (84.51%), Query Frame = -3
Query:  241 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 666
            S++ + DKVA+AL++GLKV AC+GETL++RE+G T AV   QTKAIA+K+ +W NVV+AYEPVWAIGTGK A+P QAQEVHA LRKW  +NVSA+V+A+ RI  GGSV  ANC+ELAA+PD+DGFLVGGASLKPEFI I+ +
Sbjct:  104 SDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKWFTENVSADVSAAIRIQYGGSVTAANCRELAAKPDIDGFLVGGASLKPEFIQIVNA 245          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.357e-52
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = -3
Query:  241 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 666
            S++ +G KVA+ALS+GL V AC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRII GGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  105 SDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 246          
The following BLAST results are available for this feature:
BLAST of CX675488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PETHY2.868e-6684.46Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_COPJA1.090e-6581.76Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_LACSA2.428e-6583.78Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_MAIZE7.065e-6585.62Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ORYSJ2.685e-6485.62Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_SECCE5.981e-6483.56Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_ARATH1.332e-6380.41Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_HORVU9.549e-6282.19Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_CULTA1.382e-5267.61Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPIS_RABIT2.357e-5270.42Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62E11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E11-J22-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675488 ID=CX675488; Name=CX675488; organism=Citrus sinensis; type=EST; length=668bp
AAGAAGGGAAAAGCAACCATTTATTAAATCCACAATGATAAGTTTCAAAT
CCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGATTTAACTTA
TTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAAAATTACAAC
GCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATCAGCAAGCCG
AGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCAGACTTGATA
ATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAAAAATCCATC
CACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCATTTACAGAAC
CTCCNTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTGACATTGTCT
TTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTGAGCAGGGGT
TGCAACCTTCCCGGTACCAATGGCCCANACTGGCTCATAAGCCAACACAA
CATTGTCCCAGTTGGATATTTTTTCTGCGATTGCTTTTGTTTGTTCAGCC
ACAACAGCCACTGTAGATCCTGATTCTCGCTGTTCCAGAGTCTCTCCNAC
ACAAGCNATGACTTTCAAGCCTTGAGAAAGTGCATAAGCAACTTTATCTC
CCACAAAATCATTTGACT
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