CK938381

Overview
NameCK938381
Unique NameCK938381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2109 contig Csv1_Contig2109:1..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 380.948 bits (977), Expect = 3.895e-105
Identity = 188/216 (87.04%), Postives = 205/216 (94.91%), Query Frame = 1
Query:   31 AGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCS 678
            AGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSL VDGKV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWL+ELRDHTDPNIVVML+GNKSDLRHLVAV T++GK+FAE+ESL+FMET ALE+TNV+NAFAEVLTQIYRIVSK+++E G+D G+   P KGEKI++  DVSAVKKGGCCS
Sbjct:    3 AGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDAGSG--PGKGEKINIKDDVSAVKKGGCCS 216          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 8.677e-105
Identity = 191/217 (88.02%), Postives = 203/217 (93.55%), Query Frame = 1
Query:   28 MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCS 678
            MAGYRA+D+YDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRSLNVD KVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVE WL+ELR+HTDPNIVVML+GNKSDLRHLVAV TED KSFAEKESL+FMET ALEATNV+NAFAEVLTQI+ IVSKKAME   +  N  VPSKG+KID+ KDVSAVKKGGCCS
Sbjct:    1 MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESAN--VPSKGDKIDIGKDVSAVKKGGCCS 215          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 4.927e-100
Identity = 177/218 (81.19%), Postives = 200/218 (91.74%), Query Frame = 1
Query:   28 MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCST 681
            M GYR +D+YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFAT++LNVD KV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR +TFEN  RWL+ELRDHTDPNIVVMLIGNKSDLRHLVAV TEDGKSFAE+ESL+FMET ALEATNV+NAF EVLTQIYRIVSK+A+E G+ G +S +PSKG+ I+V +D S +K+ GCCST
Sbjct:    1 MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCST 218          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 6.435e-100
Identity = 183/217 (84.33%), Postives = 203/217 (93.55%), Query Frame = 1
Query:   28 MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCS 678
            MAGYR EDDYDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATR+L VDGKV+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR +TFENV+RWL+EL++HTDPNIVVML+GNKSDLRHL+AV TEDGKS+AE+ESL FMET ALEATNV++AFAEVLTQIYRI SKK +E GED GN++VP KGEKI+V  DVSA+KK GCCS
Sbjct:    1 MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGED-GNASVP-KGEKIEVKNDVSALKKLGCCS 215          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 6.023e-98
Identity = 176/217 (81.11%), Postives = 199/217 (91.71%), Query Frame = 1
Query:   28 MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCS 678
            MAGY+A+D+YDYLFK+VLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFAT+SLN+DGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR +TFE   RWL+ELRDHTDPNIVVMLIGNKSDLRHLV VSTEDGK+FAEKESL+FMET ALEATNV+NAF+EVLTQIYRIVSK+A+E G+    S VPS+G+ I+V++D S + +  CCS
Sbjct:    1 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINVNEDSSVLNRYRCCS 217          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 7.866e-98
Identity = 174/218 (79.82%), Postives = 197/218 (90.37%), Query Frame = 1
Query:   28 MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCST 681
            MAGYRA+D+YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFAT+SLN+D KVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH T+ENV RWL+ELRDHTDPNIVVMLIGNKSDLRHLVAVST++ K  AE+E L+FMET ALEATNV+NAF E LTQIYRIVSKKA+E G++G  S+ P KGE I++  + S+ KK GCCS+
Sbjct:    1 MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINIKDEGSSWKKFGCCSS 218          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.300e-92
Identity = 169/217 (77.88%), Postives = 197/217 (90.78%), Query Frame = 1
Query:   34 GYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSK-DVSAVKKGGCCST 681
            GYRAEDDYDYLFK+VLIGDSGVGKSNLLSRF+RNEF+LESKSTIGVEFATRS+ VD K++KAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+TRH TFENVERWL+ELRDHTD NIV+ML+GNK+DLRHL AVSTED K+FAE+E+ FFMET ALE+ NV+NAF EVLT+IY++V +KA+E G+D   +A+P KG+ I+V K DVSAVKK GCCS+
Sbjct:    4 GYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDD--PAALP-KGQTINVGKDDVSAVKKVGCCSS 217          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.895e-92
Identity = 165/217 (76.04%), Postives = 196/217 (90.32%), Query Frame = 1
Query:   28 MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCS 678
            MAGYRA+++YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFAT++  V+GKV+KAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTRH+TFEN  RWLRELR HTDPNIVVMLIGNK DLRHLVAV TE+ K+FAE+ESL+FMET AL+ATNV+NAF EVLTQI++IVSK++++ G  G ++ +P KGE I+V +D S +K+ GCCS
Sbjct:    1 MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGG--GESADLPGKGETINVKEDGSVLKRMGCCS 215          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 7.903e-82
Identity = 149/215 (69.30%), Postives = 177/215 (82.33%), Query Frame = 1
Query:   37 YRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCST 681
            +R + +YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR+L V+GK +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF+NV+RWLRELRDH D NIV+M+ GNKSDL HL AVS +DG + +EKE L F+ET ALEATN++ AF  +LT+IY IVSKKA+   E    ++VP +G  I+V+ D S   K GCCST
Sbjct:    3 HRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVA-DTSGNTKKGCCST 216          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.922e-81
Identity = 150/214 (70.09%), Postives = 175/214 (81.78%), Query Frame = 1
Query:   37 YRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCCS 678
            ++ +DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRS+ VDGK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TFENVERWL+ELRDH D NIV+ML+GNKSDL+HL  V TE  ++F E+E L F+ET ALE+TNV+ AF ++LT+IY IVSKK +++ ++            ID + D    KKGGCCS
Sbjct:    3 HKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKIGEGRDVIVIDNAHDDGGKKKGGCCS 216          
The following BLAST results are available for this feature:
BLAST of CK938381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RIC2_ORYSJ3.895e-10587.04Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA1C_ARATH8.677e-10588.02Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RB11D_LOTJA4.927e-10081.19Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA1B_ARATH6.435e-10084.33Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB11E_LOTJA6.023e-9881.11Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
YPT3_NICPL7.866e-9879.82Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11B_TOBAC1.300e-9277.88Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAA1A_ARATH2.895e-9276.04Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB11C_LOTJA7.903e-8269.30Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
YPTC6_CHLRE3.922e-8170.09Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_E08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938381 ID=CK938381; Name=CK938381; organism=Citrus sinensis; type=EST; length=751bp
GGGGGAAGATATAAGGTTGCAATAGCTATGGCTGGATACAGAGCTGAAGA
TGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCCGGTGTCG
GCAAGTCCAATTTGCTTTCTAGGTTCACTAGGAACGAGTTTAGTCTCGAG
TCTAAGTCCACAATAGGTGTTGAGTTCGCTACCCGTAGCTTGAATGTCGA
TGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAAGAAAGGT
ACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGCACTTCTA
GTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAAGGTGGTT
AAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATGCTCATTG
GTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACGGAGGACGGG
AAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTCCTGCTCT
GGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACTCAAATCT
ACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGGAGGAAAT
TCTGCTGTACCTTCCAAAGGAGAGAAAATTGATGTCAGTAAAGATGTGTC
TGCTGTGAAGAAAGGTGGCTGCTGCTCAACATAGTGGGTTGATATATTTT
TAACGGAACGAAGCGGCTATGTTAGGCTTTGTCTGTTTTCTCTTCTCCGT
T
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