CX675487

Overview
NameCX675487
Unique NameCX675487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:47..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.197e-74
Identity = 136/176 (77.27%), Postives = 149/176 (84.66%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGKV 582
            M RKFFVGGNWKCNGTSEEVKKIV+ LN+AE                     K++LR+DFHVAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERRALLNESN+FVGDK AYALSQGLKVIACVGETLEQRE+GST++VVA QTKAIAEK+SDW N+V+AYEPVWAIGTGKV
Sbjct:    1 MGRKFFVGGNWKCNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKV 176          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.021e-71
Identity = 133/176 (75.57%), Postives = 146/176 (82.95%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGKV 582
            M RKFFVGGNWKCNGT+EEVKKI++TLN A+                     K+ LR DFHVAAQNCWV+KGGAFTGEVSAEMLVNLSIPWVILGHSERRALL ESN+FVGDKVAYALSQGLKVIACVGETLE+RESGST+ VVA QTKAIA+++ DW NVV+AYEPVWAIGTGKV
Sbjct:    1 MGRKFFVGGNWKCNGTAEEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKV 176          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 1.741e-71
Identity = 131/176 (74.43%), Postives = 149/176 (84.66%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGKV 582
            MARKFFVGGNWKCNGT+EEVKKIV+TLN+A+                     KS LRSDF VAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERRA+LNES++FVGDKVAYAL+QGLKVIACVGETLE+RE+GST+ VVA QTKAIA+++++W NVV+AYEPVWAIGTGKV
Sbjct:    1 MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKV 176          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 266.929 bits (681), Expect = 5.066e-71
Identity = 131/176 (74.43%), Postives = 144/176 (81.82%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGKV 582
            M RKFFVGGNWKCNGT+++V+KIV TLN+ +                     KS LR +FHVAAQNCWV+KGGAFTGEVSAEMLVNL +PWVILGHSERRALL ESN+FVGDKVAYALSQGLKVIACVGETLEQRE+GST+ VVA QTKAIAEKI DW NVV+AYEPVWAIGTGKV
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKV 176          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 257.299 bits (656), Expect = 4.014e-68
Identity = 128/176 (72.73%), Postives = 141/176 (80.11%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGKV 582
            M RKFFVGGNWKCNGT+++V KIV  LN+ +                     KS LR +  VAAQNCWV+KGGAFTGEVSAEMLVNLSIPWVILGHSERR+LL ESN+FVGDKVAYALSQGLKVIACVGETLEQRESGST+ VVA QTKAI+E+I DW NVV+AYEPVWAIGTGKV
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKV 176          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 249.595 bits (636), Expect = 8.370e-66
Identity = 124/176 (70.45%), Postives = 139/176 (78.98%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGKV 582
            M RKFFVGGNWKCNGT  +V+ IV+TLN  +                     K  LR +  VAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERR+LL ES++FVG+KVAYAL+QGLKVIACVGETLEQRE+GST+ VVAEQTKAIA+KI DW NVV+AYEPVWAIGTGKV
Sbjct:    1 MGRKFFVGGNWKCNGTVSQVETIVNTLNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKV 176          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 246.514 bits (628), Expect = 7.085e-65
Identity = 122/176 (69.32%), Postives = 137/176 (77.84%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGKV 582
            M RKFFVGGNWKCNGT E+V+ IV TLN  +                     K+ LR +  VAAQNCWV+KGGAFTGEVSAEML NL +PWVILGHSERR+LL ES++FVG+KVAYAL+QGLKVIACVGETLEQRE+GST+ VVAEQTKAIA KI DW N V+AYEPVWAIGTGKV
Sbjct:    1 MGRKFFVGGNWKCNGTVEQVEAIVQTLNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKV 176          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.934e-54
Identity = 107/177 (60.45%), Postives = 121/177 (68.36%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISDWDNVVLAYEPVWAIGTGKV 582
            M RKFFVGGNWKCNGT E V KIV TLN+                        + L+ +  VAAQNCWV+KGGAFTGEVSA+ML NL I WVILGHSERR LL ESN+FVG K AYA S+GL VIAC+GE LE+RE+G T  V  +Q K+ A      WDNVV+AYEPVWAIGTGKV
Sbjct:    1 MGRKFFVGGNWKCNGTQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKV 177          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.934e-54
Identity = 102/115 (88.70%), Postives = 110/115 (95.65%), Query Frame = 1
Query:  238 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGKV 582
            VAAQNCWV+KGGAFTGEVSAEML NL +PWVILGHSERRALLNE+N+FVGDKVAYALSQGLKVIACVGETLEQRE+G+T+ VVA QTKAIA+KIS WDNVVLAYEPVWAIGTGKV
Sbjct:    3 VAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKV 117          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.890e-50
Identity = 98/173 (56.65%), Postives = 118/173 (68.21%), Query Frame = 1
Query:   64 KFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGKV 582
            KFFVGGNWKCNGT E + K+VS LN A                      KS L     V+AQN W+ KGGAFTGE+SAE LV++   WVILGHSERR ++ E ++F+G K AYALSQ LKV+AC+GE LE+RE+G T  V  +Q KA A+ I+DW NVV+AYEPVWAIGTGKV
Sbjct:   48 KFFVGGNWKCNGTKESISKLVSDLNAATLESDVDVVVAPPFIYIDQV--KSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYALSQNLKVMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAYEPVWAIGTGKV 218          
The following BLAST results are available for this feature:
BLAST of CX675487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_COPJA2.197e-7477.27Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_PETHY1.021e-7175.57Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_ARATH1.741e-7174.43Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_MAIZE5.066e-7174.43Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ORYSJ4.014e-6872.73Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_SECCE8.370e-6670.45Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_HORVU7.085e-6569.32Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_STELP1.934e-5460.45Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIS_LACSA1.934e-5488.70Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIC_SECCE2.890e-5056.65Triosephosphate isomerase, chloroplastic OS=Secale... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62E11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E11-J22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675487 ID=CX675487; Name=CX675487; organism=Citrus sinensis; type=EST; length=582bp
CTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATCCAATCGT
CGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGGA
CATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAAGTT
CCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCT
TCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTCAAA
ATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAG
ATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAG
AAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTT
ATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTG
GAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAA
AGCAATCGCAGAAAAAATATCCGACTGGGACAATGTTGTGTTGGCTTATG
AGCCAGTTTGGGCCATTGGTACCGGGAAGGTT
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