CX046955

Overview
NameCX046955
Unique NameCX046955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:79..556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 307.76 bits (787), Expect = 1.618e-83
Identity = 143/158 (90.51%), Postives = 156/158 (98.73%), Query Frame = 3
Query:    3 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSG 476
            VIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGVV EIIHDPGRGAPLARVTFRHPFR+ KQKELF+AAEGMYTGQF+YCGKKATL+VGNVLP+RSIPEGAVVCNVEHHVGDRGVLARASGDYA++I+HNPD+DTTR+KLPSG+KKI+PSG
Sbjct:    4 VIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSG 161          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 304.294 bits (778), Expect = 1.789e-82
Identity = 140/158 (88.61%), Postives = 154/158 (97.47%), Query Frame = 3
Query:    3 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSG 476
            VIRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGVV EIIHDPGRGAPLARV FRHPFR+ KQKELF+AAEGMYTGQF+YCGKKATL+VGNVLP+RSIPEGAV+CNVEHHVGDRGV ARASGDYA++I+HNPDNDT+R+KLPSG+KKI+PSG
Sbjct:    4 VIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSG 161          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 3.985e-82
Identity = 142/158 (89.87%), Postives = 151/158 (95.57%), Query Frame = 3
Query:    3 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSG 476
            VIRAQRKGAGSVFKSHTHHRKGPA+FR+LDFGERNGYLKGV+ E+IHDPGRGAPLARVTFRHPFRY  QKELF+AAEGMYTGQFVYCGKKATLMVGNVLP+RSIPEGAVVCNVEH VGDRGV AR SGDYA++ISHNPDN TTRVKLPSGAKKI+PSG
Sbjct:    4 VIRAQRKGAGSVFKSHTHHRKGPARFRTLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGDYAIVISHNPDNGTTRVKLPSGAKKIVPSG 161          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 6.361e-80
Identity = 138/158 (87.34%), Postives = 150/158 (94.94%), Query Frame = 3
Query:    3 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSG 476
            +IRAQRKGAGSVFKSHTHHRKGPA+FRSLDFGERNGYLKGV+ E+IHDPGRGAPLARVTFR+PFRY  QKELF+AAEGMYTGQFVYCGKKATLMVGNVLP+RSIPEGAVVCNVEH VGDRGV AR SG YA++ISHNPDN TTR+KLPSG+KKI+PSG
Sbjct:    4 LIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRYPFRYNHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGAYAIVISHNPDNGTTRIKLPSGSKKIVPSG 161          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 286.574 bits (732), Expect = 3.859e-77
Identity = 135/158 (85.44%), Postives = 151/158 (95.57%), Query Frame = 3
Query:    3 VIRAQRKGA-GSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPS 473
            VIRAQRKGA GSVFKSHTHHRKGPA+FRSLD+GERNGYLKG+V EIIHDPGRGAPLARV FRHPFRYMKQKELF+AAEGMYTGQ++YCGKKA LMVGNVLP+ SIPEGAV+CNVE HVGDRG LARASGDYA++I+HNP+++TTRVKLPSG+KKI+PS
Sbjct:    4 VIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPS 161          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL8_XENLA (60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 1.020e-61
Identity = 109/157 (69.43%), Postives = 132/157 (84.08%), Query Frame = 3
Query:    3 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPS 473
            VIR QRKGAGSVFK+H  HRKG A+ R++DF ERNGY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELF+AAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC VE   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S
Sbjct:    4 VIRGQRKGAGSVFKAHVKHRKGAAKLRAIDFAERNGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISS 160          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL8_SPOFR (60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 2.273e-61
Identity = 111/157 (70.70%), Postives = 132/157 (84.08%), Query Frame = 3
Query:    3 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPS 473
            VIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR P+++  +KELFIA EG+YTGQFVYCGKKATL VGNV+PV ++PEG +VCN+E  +GDRG LARASG++A +I HNPD   TRVKLPSGAKK++PS
Sbjct:    4 VIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPS 160          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 2.273e-61
Identity = 111/157 (70.70%), Postives = 132/157 (84.08%), Query Frame = 3
Query:    3 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPS 473
            VIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR P+++  +KELFIA EG+YTGQFVYCGKKATL VGNV+PV ++PEG +VCN+E  +GDRG LARASG++A +I HNPD   TRVKLPSGAKK++PS
Sbjct:    4 VIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPS 160          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 5.064e-61
Identity = 108/157 (68.79%), Postives = 132/157 (84.08%), Query Frame = 3
Query:    3 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPS 473
            VIR QRKGAGSVFK+H  HRKG A+ R++DF ER+GY+KG+V +IIHDPGRGAPLA+V FR P+R+ K+ ELF+AAEG++TGQFVYCGKKA L +GNVLPV ++PEG +VC VE   GDRG LARASG+YA +ISHNP+   TRVKLPSG+KK+I S
Sbjct:    4 VIRGQRKGAGSVFKAHVKHRKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISS 160          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 6.614e-61
Identity = 108/157 (68.79%), Postives = 130/157 (82.80%), Query Frame = 3
Query:    3 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPS 473
            VIRAQRKGAGSVFK+H   RKG A+ RSLDF ER+GY++GVV +IIHDPGRGAPLA V FR P+RY  +KELFIA EGM+TGQFVYCG+KATL +GNV+P+  +PEG ++CN+E   GDRG LAR SG+YA +I+HN D   TRVKLPSGAKK++PS
Sbjct:    4 VIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPS 160          
The following BLAST results are available for this feature:
BLAST of CX046955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 298
Match NameE-valueIdentityDescription
RL81_ARATH1.618e-8390.5160S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL83_ARATH1.789e-8288.6160S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL8_SOLLC3.985e-8289.8760S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL8_TOBAC6.361e-8087.3460S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL82_ARATH3.859e-7785.4460S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL8_XENLA1.020e-6169.4360S ribosomal protein L8 OS=Xenopus laevis GN=rpl8... [more]
RL8_SPOFR2.273e-6170.7060S ribosomal protein L8 OS=Spodoptera frugiperda ... [more]
RL8_MAMBR2.273e-6170.7060S ribosomal protein L8 OS=Mamestra brassicae GN=... [more]
RL8_XENTR5.064e-6168.7960S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]
RL8_DROME6.614e-6168.7960S ribosomal protein L8 OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C02-F4-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046955 ID=CX046955; Name=CX046955; organism=Citrus sinensis; type=EST; length=478bp
GTGTGATTCGCGCACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCAC
ACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGA
GCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGG
GTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCCTTTTCGCTAC
ATGAAACAAAAGGAGCTTTTCATTGCCGCCGAGGGTATGTACACGGGTCA
GTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTGC
CCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCAT
GTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTAT
CATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTG
GTGCCAAAAAGATTATTCCAAGTGGCTG
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