CX675482

Overview
NameCX675482
Unique NameCX675482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.351e-49
Identity = 87/153 (56.86%), Postives = 117/153 (76.47%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK T+   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:   26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.351e-49
Identity = 87/153 (56.86%), Postives = 117/153 (76.47%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK T+   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:   26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.351e-49
Identity = 86/153 (56.21%), Postives = 114/153 (74.51%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK  +   +  K++    +   SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:   26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.764e-49
Identity = 84/134 (62.69%), Postives = 102/134 (76.12%), Query Frame = 3
Query:  297 WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAY-PNAYIRCLAFNNQKQGQCMSFLIQKP 695
            W +KT +NGS+  CM+ W P NN KFE LSYLP LS D++AK+IDY++K GW PC+EFD  G V RE S MPGYYDGRYWTMWKLPMFGC DS+ +L EI+ECKK Y    YIRCL F+N +Q QC SF++ +P
Sbjct:   45 WQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.304e-49
Identity = 86/159 (54.09%), Postives = 111/159 (69.81%), Query Frame = 3
Query:  234 SGYLGLK-----PTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            S + GLK     P+SK +        W  KT SNGS+ RCM+ W P  NKKFE LSYLP L+ + + KE++Y+LK  W+PCLEF+E G + R     PGYYDGRYW MWKLPMFGC ++SQ+LNE+ EC KAYPNA+IR + F+N +Q QC+SF++ KP
Sbjct:   30 SAFTGLKSMAQFPSSKTMSNA--GAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.304e-49
Identity = 86/153 (56.21%), Postives = 116/153 (75.82%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK  +   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP L+D+ + KE++Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+QECKK+YP A+IR + F+N +Q QC+SF+  KP
Sbjct:   27 FTGLKSAATFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.132e-49
Identity = 82/157 (52.23%), Postives = 114/157 (72.61%), Query Frame = 3
Query:  234 SGYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            S + GLK T++     K S A   W  KT SNG + RCM+ W P  N KFE LSYLP+L+++ + KE++Y+L+  W+PCLEFD  G + R+ ++ PGYYDGRYW MWKLPMFGC ++SQ++NE++EC KAYP A+IR + F+N +Q QC+SF++ KP
Sbjct:   14 SAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.132e-49
Identity = 86/153 (56.21%), Postives = 116/153 (75.82%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK  +   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:   26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.703e-49
Identity = 94/169 (55.62%), Postives = 117/169 (69.23%), Query Frame = 3
Query:  189 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            P  M AS  TA      + GLK T  A LPV    + S   VSNG + RCM+ W    NKKFE LSYLP LS D + K++DY+L+ GWIPCLEF +VG+V+RENS  P YYDGRYWTMWKLPMFGCND++Q+  E+QE  K+YP+A+ R + F+N KQ QC+SF+  KP
Sbjct:    3 PTVMMASSATAVAP---FQGLKST--ASLPVARRSSRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFSKVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKP 166          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.703e-49
Identity = 84/153 (54.90%), Postives = 114/153 (74.51%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK  S A  PV   +   S   SNG + +CMK W P+  K++E LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+  KP
Sbjct:   20 FTGLK--SNAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
The following BLAST results are available for this feature:
BLAST of CX675482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RBSC_SOLTU1.351e-4956.86Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSB_SOLTU1.351e-4956.86Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS3_SOLTU1.351e-4956.21Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_MARPA1.764e-4962.69Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA2.304e-4954.09Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOLTU2.304e-4956.21Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_PINTH5.132e-4952.23Ribulose bisphosphate carboxylase small chain, chl... [more]
RBSA_SOLTU5.132e-4956.21Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS_MAIZE6.703e-4955.62Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_FLAPR6.703e-4954.90Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62E08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E08-J16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675482 ID=CX675482; Name=CX675482; organism=Citrus sinensis; type=EST; length=749bp
CTTTGATCTTCCCTAATCCCTTAACAAACCATACATCACTTCACAAACAC
CTAGGCTAACTCCTTTTGTCCTTTACTTGAACGGTTTCCATTGCCTTGAG
AACTAAAATAATTAATTATTACTCTTTTGCTATCTCGGTCTTAAGTGTTG
CCTCTCTCTTTTAACTATCTTGTTTCTTGAAACAGTGCCCGAAGAAGATG
TCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTCTGGCTATCTTGGCCT
AAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGGATTCCATTGCATGGA
GCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGATGCATGAAGACATGG
AATCCAATCAATAACAAAAAGTTTGAGGCCCTCTCCTACCTGCCATCGCT
CTCGGATGATTCAATTGCAAAGGAGATTGACTACATGCTCAAAAAGGGAT
GGATCCCTTGCCTTGAATTTGATGAGGTGGGATATGTGCACAGGGAGAAT
AGCAAAATGCCAGGGTATTATGATGGGAGGTATTGGACAATGTGGAAGTT
GCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATGAAATACAAG
AGTGCAAAAAAGCATACCCNAATGCTTATATTCGCTGCTTGGCATTTAAC
AATCAGAAACAGGGTCAGTGCATGTCCTTTCTCATCCAGAAACCAACCAC
CACCACTAGCACCTAAAAGCACTTCTCTCACTTTGTTTGGTTGAATTCT
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