CN187671

Overview
NameCN187671
Unique NameCN187671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187671 vs. ExPASy Swiss-Prot
Match: LAC8_ARATH (Laccase-8 OS=Arabidopsis thaliana GN=LAC8 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 4.273e-80
Identity = 129/218 (59.17%), Postives = 164/218 (75.23%), Query Frame = -2
Query:   98 NITGLSGGPQWVPCPRRVDERMFVTLGLGLEQCPANATCQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVKFDYTN--TNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 745
            NIT L GGP W P PR VDE+MF+T+GLGL+ CPA   C GP  QR + S+NN +F  P  +S+ +AYF+N+ G+Y  +FPNQPP+KFDYT      +NDM ++FP + TSVK ++FNSTVE+VLQNTA+I+ ESHPMHLHG++FYVL  GFGNY+  RD++  NL NPQ  NT+ VP GGW V+RF ANNPGVW  HCH D HLP+G+ + FIV+NG
Sbjct:  332 NITSLVGGPHWTPVPRHVDEKMFITMGLGLDPCPAGTKCIGPLGQRYAGSLNNRTFMIPERISMQEAYFYNISGIYTDDFPNQPPLKFDYTKFEQRTNNDMKMMFPERKTSVKKIRFNSTVEIVLQNTAIISPESHPMHLHGFNFYVLGYGFGNYDPIRDARKLNLFNPQMHNTVGVPPGGWVVLRFIANNPGVWLFHCHMDAHLPYGIMSAFIVQNG 549          
BLAST of CN187671 vs. ExPASy Swiss-Prot
Match: LAC7_ARATH (Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.795e-78
Identity = 139/217 (64.06%), Postives = 165/217 (76.04%), Query Frame = -2
Query:   98 NITGLSGGPQWVPCPRRVDERMFVTLGLGLEQCPANATCQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVKFDYTNTNVSN-DMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 745
            N+T L  GP WVP PR VDE M VT+GLGLE C  N TC      + SASM+NHSF  P  LSIL+A F +V G++  +FP+QPPVKFDYTN NV+  +  LLF  K+TS K+LKFN+TVE+VLQN ALIA ESHPMHLHG++F+VLAQGFGNY+ SRD    NLV+PQ RNT+AVP+GGWAVIRF ANNPG W  HCH DVHLP+GL   F+V+NG
Sbjct:  339 NLTALVNGPHWVPVPRYVDEEMLVTIGLGLEACADNTTCP-----KFSASMSNHSFVLPKKLSILEAVFHDVKGIFTADFPDQPPVKFDYTNPNVTQTNPGLLFTQKSTSAKILKFNTTVEVVLQNHALIAAESHPMHLHGFNFHVLAQGFGNYDPSRDRSKLNLVDPQSRNTLAVPVGGWAVIRFTANNPGAWIFHCHIDVHLPFGLGMIFVVKNG 550          
BLAST of CN187671 vs. ExPASy Swiss-Prot
Match: LAC9_ARATH (Laccase-9 OS=Arabidopsis thaliana GN=LAC9 PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 5.223e-78
Identity = 126/219 (57.53%), Postives = 163/219 (74.43%), Query Frame = -2
Query:   98 NITGLSGGPQWVPCPRRVDERMFVTLGLGLEQCPANATCQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVKFDYTNTN---VSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 745
            NIT L GGP W P PR VDE+MF+T+GLGL+ CP+NA C GP  QRL+ S+NN +F  P  +S+ +AYF+N+ GVY  +FP+QPP+KFD+T       ++DM ++FP + TSVK ++FNSTVE+VLQNT ++  ESHPMHLHG++FYVL  GFGNY+  RD++  NL NPQ  NT+ VP GGW V+RF ANNPG+W  HCH D HLP G+   FIV+NG
Sbjct:  333 NITSLVGGPHWTPVPRHVDEKMFITMGLGLDPCPSNAKCVGPLDQRLAGSLNNRTFMIPERISMQEAYFYNITGVYTDDFPDQPPLKFDFTKFEQHPTNSDMEMMFPERKTSVKTIRFNSTVEIVLQNTGILTPESHPMHLHGFNFYVLGYGFGNYDPIRDARKLNLFNPQMHNTVGVPPGGWVVLRFIANNPGIWLFHCHMDAHLPLGIMMAFIVQNG 551          
BLAST of CN187671 vs. ExPASy Swiss-Prot
Match: LAC5_ARATH (Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.973e-65
Identity = 111/205 (54.15%), Postives = 146/205 (71.22%), Query Frame = -2
Query:   98 PRRVDERMFVTLGLGLEQCPAN---ATCQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVKFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 703
            P  +DE +FVT+GLGL  CP N     CQGP   R +ASMNN SF  P++ S+LQA+   + GV+  +FP +PPVKFDYT  N+S   SL  P + T +  LK+ S V++VLQ+T ++  E+HP+HLHGYDFY++A+GFGN+N  +D+  FNL +P  RNT+ VP+ GWAVIRF A+NPGVW MHCH D H+ WGLA  F+VENG
Sbjct:  361 PTEIDENLFVTIGLGLNNCPKNFRSRRCQGPNGTRFTASMNNVSFALPSNYSLLQAHHHGIPGVFTTDFPAKPPVKFDYTGNNISR--SLYQPDRGTKLYKLKYGSRVQIVLQDTGIVTPENHPIHLHGYDFYIIAEGFGNFNPKKDTAKFNLEDPPLRNTVGVPVNGWAVIRFIADNPGVWIMHCHLDAHISWGLAMAFLVENG 563          
BLAST of CN187671 vs. ExPASy Swiss-Prot
Match: LAC12_ARATH (Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.322e-64
Identity = 109/208 (52.40%), Postives = 150/208 (72.12%), Query Frame = -2
Query:   98 VPCPRRVDERMFVTLGLGLEQCPAN---ATCQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVKFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 712
            V  P+ +D+ +F T+GLGL+ CP     + CQG    R +ASMNN SF  P++ S+LQA+   + GV+  +FP++PPVKFDYT  N+S   +L  P K T +  LK+ S V++VLQ+T ++  E+HP+HLHGYDFY++ +GFGN+N  +D+  FNLV+P  RNT+AVP+ GWAVIRF A+NPGVW MHCH DVH+ WGLA  F+V+NG
Sbjct:  343 VVVPKTIDDNLFFTIGLGLDNCPKKFPKSRCQGLNGTRFTASMNNVSFVLPSNFSLLQAHSNGIPGVFTTDFPSKPPVKFDYTGNNISR--ALFQPVKGTKLYKLKYGSRVQVVLQDTNIVTSENHPIHLHGYDFYIVGEGFGNFNPKKDTSKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGVWLMHCHLDVHIKWGLAMAFLVDNG 548          
BLAST of CN187671 vs. ExPASy Swiss-Prot
Match: LAC3_ORYSJ (Laccase-3 OS=Oryza sativa subsp. japonica GN=LAC3 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.018e-62
Identity = 108/208 (51.92%), Postives = 146/208 (70.19%), Query Frame = -2
Query:   98 PQWVPCPRRVDERMFVTLGLGLEQCPANATCQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVKFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 721
            P  V  P  VDE +F T+G+GL  C     C GP + R +ASMNN SF  P + S+L A+++ + GV+  +FP  PPV+FDYT  NV     L  P   T +  LKF S V++VLQ+T++++ E+HP+H+HGYDFY+LA+GFGN++  +D+K FN V+P +RNT+AVP  GWAVIRF A+NPGVW MHCH DVH+ WGLA  F+VE+G
Sbjct:  345 PHEVKIPGPVDENLFFTVGVGLFNCEPGQQCGGPNNTRFTASMNNISFVFPQTTSLLHAHYYGIPGVFTTDFPAYPPVQFDYTAQNVPR--YLWQPVPATKLYKLKFGSVVQIVLQDTSIVSPENHPIHIHGYDFYILAEGFGNFDPKKDAKKFNYVDPPQRNTVAVPTNGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVEDG 550          
BLAST of CN187671 vs. ExPASy Swiss-Prot
Match: LAC3_ARATH (Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 4.911e-60
Identity = 111/206 (53.88%), Postives = 137/206 (66.50%), Query Frame = -2
Query:   98 PCPRRVDERMFVTLGLGLEQC--PANATCQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVKFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 709
            P P++VDE +F T+GLGL  C  P +  CQGP   R +ASMNN SF  P S S++QAY+    G++  +FP  PPV+FDYT  NVS    L  P K T    LK+ S V++VLQ+T+++  E+HPMHLHGY FYV+  GFGN+N   D   FNL +P  RNTI  P GGW  IRF A+NPG WFMHCH D HL WGLA  F+VENG
Sbjct:  351 PVPQQVDENLFFTVGLGLINCANPNSPRCQGPNGTRFAASMNNMSFVLPRSNSVMQAYYQGTPGIFTTDFPPVPPVQFDYTG-NVSR--GLWQPIKGTKAYKLKYKSNVQIVLQDTSIVTPENHPMHLHGYQFYVVGSGFGNFNPRTDPARFNLFDPPERNTIGTPPGGWVAIRFVADNPGAWFMHCHIDSHLGWGLAMVFLVENG 553          
BLAST of CN187671 vs. ExPASy Swiss-Prot
Match: LAC23_ORYSJ (Laccase-23 OS=Oryza sativa subsp. japonica GN=LAC23 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.430e-59
Identity = 112/206 (54.37%), Postives = 143/206 (69.42%), Query Frame = -2
Query:   98 PRRVDERMFVTLGLGLEQCPANAT---CQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNV-GGVYEPNFPNQPPVKFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 703
            P RVDE +F T+G+GL  C  NAT   C GP   R +AS+NN SF  P+S SILQA+     GGV+  +FP  PPV+FDYT  NVS   +L  P   T V  LK+ S V++VLQ T + A E+HP+HLHGYDFY+LA+G GN++A  D+  FN+ +P  RNT+ VP+ GWAVIRF A+NPGVW MHCH DVH+ WGLA  F+V++G
Sbjct:  348 PSRVDESLFFTVGVGLFNC-TNATAQQCGGPNGTRFAASINNVSFVLPSSTSILQAHHHGAPGGVFTADFPASPPVQFDYTAQNVSR--ALWQPVPGTKVYKLKYGSAVQVVLQGTNIFAGENHPIHLHGYDFYILAEGLGNFDAGADTAKFNMEDPPMRNTVGVPVNGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVDDG 550          
BLAST of CN187671 vs. ExPASy Swiss-Prot
Match: LAC13_ARATH (Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.092e-59
Identity = 111/211 (52.61%), Postives = 139/211 (65.88%), Query Frame = -2
Query:   98 PQWVPCPRRVDERMFVTLGLGLEQCPANAT--CQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNVG-GVYEPNFPNQPPVKFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 721
            P  V  P  +DE +F T+GLGL  CP   T  CQGP   R +AS+NN SF  P   SI+QAY+     GV+  +FP  PPV FDYT  NVS    L  P + T    LKFNS V+++LQ+T+++  E+HPMHLHGY+FYV+  G GN+N + D+ +FNL++P RRNTI  P GGW  IRF ANNPG W MHCH D H+ WGLA  F+VENG
Sbjct:  345 PSKVKVPLEIDENLFFTVGLGLFNCPTPNTQRCQGPNGTRFTASINNVSFVFPKQNSIMQAYYQGTPTGVFTTDFPPTPPVTFDYTG-NVSR--GLWQPTRGTKAYKLKFNSQVQIILQDTSIVTTENHPMHLHGYEFYVVGTGVGNFNPNTDTSSFNLIDPPRRNTIGTPPGGWVAIRFVANNPGAWLMHCHIDSHIFWGLAMVFLVENG 552          
BLAST of CN187671 vs. ExPASy Swiss-Prot
Match: LAC25_ORYSJ (Laccase-25 OS=Oryza sativa subsp. japonica GN=LAC25 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.263e-59
Identity = 112/204 (54.90%), Postives = 142/204 (69.61%), Query Frame = -2
Query:   98 PRRVDERMFVTLGLGLEQC-PANATCQGPGSQRLSASMNNHSFQAPTSLSILQAYFFNV-GGVYEPNFPNQPPVKFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 703
            P  VD  M+VT+GLG+  C P    C        S+SMNN SF  P + S+L+A+F     GVY  +FP+ PPV FDYT    S++ ++ F  K+T VK L++N TVEMVLQNT LIA ESHPMH+HG++F++LAQGFGNY+  R  + FNLV+PQ RNTIAVP GGWAVIRF A+NPG+W+MHCHFD H+  GLA    V +G
Sbjct:  357 PLAVDTHMYVTVGLGVSLCQPEQLLCNRSAPPVFSSSMNNASFVVPKNTSLLEAHFRREPAGVYTRDFPDTPPVVFDYTGDE-SDNATMQFTTKSTKVKTLRYNETVEMVLQNTRLIAKESHPMHIHGFNFFILAQGFGNYDKRRAERRFNLVDPQERNTIAVPTGGWAVIRFVADNPGMWYMHCHFDAHISLGLAMVLEVLDG 559          
The following BLAST results are available for this feature:
BLAST of CN187671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
LAC8_ARATH4.273e-8059.17Laccase-8 OS=Arabidopsis thaliana GN=LAC8 PE=2 SV=... [more]
LAC7_ARATH1.795e-7864.06Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=... [more]
LAC9_ARATH5.223e-7857.53Laccase-9 OS=Arabidopsis thaliana GN=LAC9 PE=2 SV=... [more]
LAC5_ARATH2.973e-6554.15Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=... [more]
LAC12_ARATH7.322e-6452.40Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 S... [more]
LAC3_ORYSJ4.018e-6251.92Laccase-3 OS=Oryza sativa subsp. japonica GN=LAC3 ... [more]
LAC3_ARATH4.911e-6053.88Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=... [more]
LAC23_ORYSJ5.430e-5954.37Laccase-23 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC13_ARATH7.092e-5952.61Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 S... [more]
LAC25_ORYSJ9.263e-5954.90Laccase-25 OS=Oryza sativa subsp. japonica GN=LAC2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004N08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187671 ID=CN187671; Name=CN187671; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTTTTTTTTTTTTGTGGAATTATAATAATGGATGAACTTCTCCCTC
TGGGGAAGGTCAGCCGGTGGAGGAGGCAACATCGTCGACGGCGTCGGCCC
ATTTTCAACAATAAAAGTCGTGGCCAGACCCCACGGTAAGTGAACGTCAA
AGTGGCAGTGCATGAACCAAACACCTGGATTATTTGCGCGGAATCTGATA
ACGGCCCATCCACCGATAGGAACAGCAATGGTGTTACGCCTCTGTGGGTT
GACGAGATTGAAGTTTTTGCTGTCTCTGGAGGCGTTATAGTTTCCGAACC
CTTGAGCCAATACGTAAAAGTCGTAGCCGTGAAGGTGCATGGGATGACTC
TCCACCGCGATCAACGCTGTGTTTTGCAGGACCATCTCCACCGTCGAGTT
GAACTTCAACATCTTGACGCTCGTTGTTTTTGGAGGAAACAGCAGTGACA
TGTCGTTGCTGACGTTAGTGTTTGTGTAGTCAAATTTGACGGGAGGCTGG
TTTGGGAAATTGGGCTCGTAAACTCCACCCACGTTGAAGAAATATGCTTG
TAGAATTGACAAACTTGTGGGGGCCTGGAATGAATGATTGTTCATGCTGG
CAGAGAGTCTTTGCGAGCCCGGACCTTGACATGTGGCATTTGCTGGGCAT
TGCTCAAGCCCCAATCCTAAAGTCACAAACATACGTTCATCCACTCGACG
TGGGCATGGGACCCATTGAGGTCCACCACTTAATCCAGTTATATTA
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