CN187669

Overview
NameCN187669
Unique NameCN187669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187669 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 5.677e-91
Identity = 163/200 (81.50%), Postives = 186/200 (93.00%), Query Frame = 3
Query:    6 LFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 599
            LFTTITVDE APGLKTILSF+VPDQRSGK+E+QYLHDYAGI TSVGLTANPIVNFS V+GTN+++LGTD+SFD+K+G+FTKCNAGLSF NADL+ASLNLNNKGD+L ASYYH V+PL  TAVGAEV HSFSTN+N ITVGTQH LDPLT++KAR+NN G ASAL+QHEWRPKSLFT+SGEVDTK+++K AKFGLALALKP
Sbjct:   77 LFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276          
BLAST of CN187669 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 7.182e-86
Identity = 154/200 (77.00%), Postives = 184/200 (92.00%), Query Frame = 3
Query:    6 LFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 599
            ++TTITVDEPAPGLKTI SF VPDQ+SGKVELQYLH+YAGI+TS+GLTA+P+VNFS V G N ++LGTDLSFD+ +GNFTKCNAGLSF+++DLIASL LN+KGD+++ASYYH V P+  TAVGAE+ HSFS+N+NT+T+GTQH+LDPLTT+KARVN+ G ASALIQHEWRPKSLFTISGEVDT+AIEKSAK GLA+ALKP
Sbjct:   77 VYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276          
BLAST of CN187669 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 304.679 bits (779), Expect = 3.688e-82
Identity = 154/197 (78.17%), Postives = 173/197 (87.82%), Query Frame = 3
Query:   15 TITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 599
            T TVDE APGL++I SFKVPDQ SGKVELQYLH+YAGISTS+GLT NP VNFS VIG+NVL++GTD+SFD+KSGNFTK NAGLSF   DLIASL +N+KGD L ASYYH VNPL  TAVGAEV H  S+ D+TITVGTQH LDPLT++KARVN+AGIASALIQHEW+PKS FTISGEVDTK+I+KSAK GLALALKP
Sbjct:   80 TATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276          
BLAST of CN187669 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 1.894e-78
Identity = 147/200 (73.50%), Postives = 167/200 (83.50%), Query Frame = 3
Query:    6 LFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 599
            LFTTITV+EPAPG+K ILSFKVP+Q SGKVELQYLH+YAGIS+SVGL ANPIVNFS+VIGTN L+ G D+SFD+K G  TK NA ++F   DLI SL LN KGD L+ASYYH +NPL  TAVG ++ H FST +NT T+GTQH LDPLTT+K RV N+G ASALIQHEWRPKSL TIS EVDTKAIEKSAK GL+LALKP
Sbjct:   77 LFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276          
BLAST of CN187669 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 287.73 bits (735), Expect = 4.666e-77
Identity = 141/197 (71.57%), Postives = 168/197 (85.28%), Query Frame = 3
Query:   12 TTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVN-PLTAVGAEVIHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 599
            TT+TVDE  PGLK+ILSF VPDQRSGK ELQY HDYAG+S S+GLTA+P+VN S+V GT  L++G D+S D+ +GN TK NAGLSF+N DLIASLNLNNKGDSL ASYYH VN   TAVGAE+ HSFS+N+N++T GTQH LDPLT +KAR NN+G ASAL+QHEWRPKS++TIS EVDTKAI+KS+K G+A+ALKP
Sbjct:   78 TTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274          
BLAST of CN187669 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 286.574 bits (732), Expect = 1.039e-76
Identity = 138/198 (69.70%), Postives = 165/198 (83.33%), Query Frame = 3
Query:    6 LFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 599
            L TT+T DEPAPGLK I+  K+PD +SGK E+QY HDYAGISTSVG TA PIVNFS V+GTN LSLGTD++++++SGNF   NAG +F   DL ASL LN+KG+ L ASYY  V+P T VGAE+ H+F+T +N ITVGTQH LDPLTT+KARVNNAG+A+ALIQHEWRPKS FT+SGEVD+KAI+KSAK G+ALALKP
Sbjct:   77 LLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274          
BLAST of CN187669 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.405e-73
Identity = 140/200 (70.00%), Postives = 165/200 (82.50%), Query Frame = 3
Query:    6 LFTTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL-TAVGAEVIHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 599
            + TTIT D+  APGLKTILSF VPDQ+SGKVELQYLHDYAGI+ S+GLTANP+VN S   GT+ L++G D+S D+ + NF K NA LS+ N DLIASLNLNNKGDSL ASYYH V    TAVGAE+ HSFS+N+N++T GTQH LDPLT +KAR+NN+G ASALIQHE+ PKSL TIS EVDTKAIEKS+K G+A+ALKP
Sbjct:   76 VITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEKSGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275          
BLAST of CN187669 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.402e-65
Identity = 126/200 (63.00%), Postives = 155/200 (77.50%), Query Frame = 3
Query:    6 LFTTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFV--NPLTAVGAEVIHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALK 596
            L TTITVDE   PGLK+I++  VPDQRSGK+E QYLH+YAG++ SVGL +NP+VN S   G+  LS+G D+SFD+ + +FTK NA LS  + DLIASL+LNN GD+L ASYYH V  +  TAVGAE+ HS S N++T+  G+QH LDP TT+K R NN G+ASAL+QHEWRPKS  TISG+VDTKAIEKS K GL+L LK
Sbjct:   77 LLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKSTKVGLSLVLK 276          
BLAST of CN187669 vs. ExPASy Swiss-Prot
Match: VDAC2_XENLA (Voltage-dependent anion-selective channel protein 2 OS=Xenopus laevis GN=vdac2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 55/197 (27.92%), Postives = 83/197 (42.13%), Query Frame = 3
Query:   27 DEPAPGLKTILSFKVP-----DQRSGKVELQYLHDYAGISTSVGLT-ANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSA-KFGLALALK 596
            D+ A GLK  L+F         ++SGKV+  Y  +Y  +   V    A P ++ SAV+G      G  ++FDS     TK N  + +   D     N+N+ G   A S Y  V+        +  +   N     +  ++ LD    + A+VNN+ +         RP    T+S  VD K I     K GL L L+
Sbjct:   88 DQIAKGLK--LTFDTTFSPNTGKKSGKVKAAYKQEYVNLGCDVDFDFAGPAIHGSAVVGYEGWLAGYQMTFDSAKSKLTKNNFAVGYKTGDFQLHTNVND-GSEFAGSIYQKVSDKMETAVNLAWTSGNNSTRFGIAAKYQLDSHAAISAKVNNSSLVGVGYTQTLRPGVKLTLSALVDGKNINAGGHKLGLGLELE 281          
BLAST of CN187669 vs. ExPASy Swiss-Prot
Match: VDAC_DROME (Voltage-dependent anion-selective channel OS=Drosophila melanogaster GN=porin PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 53/203 (26.11%), Postives = 91/203 (44.83%), Query Frame = 3
Query:    6 LFTTITV-DEPAPGLKTILSFKVPDQ---RSGKVELQYLHDYAGISTSVGLTAN-PIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTNDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSA-KFGLALALK 596
            LFT + V D+   GLK  L      Q   ++GK ++ Y H+     + V +    P++N SAV+G      G   +FD++    T  N  L +   D +    +N+ G   + S +   +    VG ++  +  T++    +G ++ LD   +++A+VNNA       Q + R     T+S  VD K       K G+ L L+
Sbjct:   80 LFTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHENVKADSDVNIDLKGPLINASAVLGYQGWLAGYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVND-GQEFSGSIFQRTSDKLDVGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQVGLGYQQKLRDGVTLTLSTLVDGKNFNAGGHKIGVGLELE 281          
The following BLAST results are available for this feature:
BLAST of CN187669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
VDAC1_SOLTU5.677e-9181.50Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC2_SOLTU7.182e-8677.00Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_ARATH3.688e-8278.17Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC_PEA1.894e-7873.50Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ORYSJ4.666e-7771.57Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC2_ARATH1.039e-7669.70Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_WHEAT1.405e-7370.00Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE2.402e-6563.00Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC2_XENLA8.964e-1227.92Voltage-dependent anion-selective channel protein ... [more]
VDAC_DROME7.589e-1126.11Voltage-dependent anion-selective channel OS=Droso... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0004N06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187669 ID=CN187669; Name=CN187669; organism=Citrus sinensis; type=EST; length=775bp
ATTATCTTTTCACAACTATCACTGTTGATGAACCTGCTCCTGGGCTGAAA
ACGATCCTAAGCTTCAAAGTTCCAGATCAAAGGTCTGGCAAGGTTGAACT
CCAGTATTTGCATGATTATGCGGGGATAAGCACAAGTGTCGGCTTAACAG
CGAATCCTATTGTTAACTTCTCGGCTGTGATTGGTACTAATGTTCTCTCT
CTTGGTACTGATCTGTCATTTGACTCCAAATCTGGGAACTTCACTAAATG
CAATGCTGGTCTGAGCTTCAACAATGCCGACCTTATTGCTTCATTGAATT
TGAACAACAAAGGTGATTCCCTGGCTGCATCCTACTACCACTTTGTTAAT
CCCTTGACAGCTGTTGGTGCAGAAGTAATCCATAGCTTCTCAACCAATGA
CAATACCATCACTGTTGGGACCCAGCACATATTAGATCCACTGACCACAT
TGAAGGCGCGAGTGAACAATGCTGGCATTGCTAGTGCTCTCATCCAGCAT
GAGTGGCGTCCAAAGTCGTTGTTCACCATTTCTGGTGAGGTGGACACCAA
GGCCATTGAGAAGAGTGCCAAATTTGGACTGGCATTGGCTCTAAAGCCAT
AGTTGAGAGCTTGGTAGGTGTTAGTAGGCATAGTTTAGCTGTCTGTTCAA
AACTGATTATGTGTTTTGTTTTATCTCTTCTCGGTGGTTTTGGATTGTAA
AATAAAATTGGAGGATCATAAACCTGTGTCATAACTTTTGAGGGCTTTTA
CCATTTCCAATTAACCTTTTGACTG
back to top