EY665932

Overview
NameEY665932
Unique NameEY665932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665932 vs. ExPASy Swiss-Prot
Match: CLPR3_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.860e-30
Identity = 85/165 (51.52%), Postives = 95/165 (57.58%), Query Frame = 3
Query:   75 SFLQAPMAALVPSTSVHS------LRSKSTRSLKTF-------CSAKIPNPMPAHINPNDPFLSKLXXXXXXSPEAFVNRPSNSGTLPYLDIYDSPTLMASPAQVERSATYNEHRXXXXXXXXXXXXXHGRIVYIGMPLVPAVTELVVAETDVLA-VDGSQGTYI 527
            S LQA M +L+P +S  S        S   R+LKTF        SAKIP P    INP DPFLS L      SPE  +NRP N+   PYLDI+DSP LM+SPAQVERS  YNEHR              GRIVYIGMPLVPAVTELVVAE   L  +D  +  YI
Sbjct:    3 SCLQASMNSLLPRSSSFSPHPPLSSNSSGRRNLKTFRYAFRAKASAKIPMPP---INPKDPFLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYI 164          

HSP 2 Score: 95.1301 bits (235), Expect = 5.229e-19
Identity = 53/98 (54.08%), Postives = 68/98 (69.39%), Query Frame = 1
Query:  472 LLWQKLMYLQWMDPKAPIYLYINSTGTTRDEGESVGMESEGFAIYDTLMQNEGRGHIQLAVGSCYRDGLVNYLVGGTKRKRGYEGLRPK**LHKPRLP 765
            L+  +LMYLQW+DPK PIY+YINSTGTTRD+GE+VGMESEGFAIYD+LMQ +   H  + VG+      +  L  GTK KR +     K  + +PR+P
Sbjct:  145 LVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVH-TVCVGAAIGQACL-LLSAGTKGKR-FMMPHAKAMIQQPRVP 239          
BLAST of EY665932 vs. ExPASy Swiss-Prot
Match: CLPR4_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.348e-12
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 1
Query:  472 LLWQKLMYLQWMDPKAPIYLYINSTGTTRDEGESVGMESEGFAIYDTLMQNEGRGHIQ-----LAVGSCYRDGLVNYLVGGTKRKR 714
            L+  + +YLQ+ D + PIYLYINSTGTT++ GE +G ++E FAIYD +      G+++     L VG+ + +  +  L  G K  R
Sbjct:  129 LILAEFLYLQYEDEEKPIYLYINSTGTTKN-GEKLGYDTEAFAIYDVM------GYVKPPIFTLCVGNAWGEAAL-LLTAGAKGNR 206          

HSP 2 Score: 35.8094 bits (81), Expect = 2.348e-12
Identity = 42/147 (28.57%), Postives = 64/147 (43.54%), Query Frame = 3
Query:   63 AMSTSF--LQAPMAALVPSTSVHSLRSK----STRSLKTFCSAKIPNPMPAHINPNDPFLSKLXXXXXXSPEAFVNRPSNSGTLPYLDIYDSPTLMASPAQVERSATYNEHRXXXXXXXXXXXXXHGRIVYIGMPLVPAVTELVVAE 485
            A +TSF  L+A  +A++PS S  +LRSK    S+ SL+   S    +P       +D   +KL      +P  F +     G +  +  +   +    P     S  +                   RIVY+GM LVP+VTEL++AE
Sbjct:    6 ATATSFTTLRARTSAIIPS-STRNLRSKPRFSSSSSLRASLSNGFLSPYTGGSISSDLCGAKLRAESL-NPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKN-----------------RIVYLGMSLVPSVTELILAE 133          
The following BLAST results are available for this feature:
BLAST of EY665932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CLPR3_ARATH3.860e-3051.52ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPR4_ARATH2.348e-1239.53ATP-dependent Clp protease proteolytic subunit-rel... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-007-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665932 ID=EY665932; Name=EY665932; organism=Citrus sinensis; type=EST; length=854bp
AAAACTACAAGCACACTTTAACAGAACTCACCAATTTAATTAGAAATAAA
CGAAAATAAAAAGCCATGTCGACGAGTTTCCTGCAAGCACCCATGGCGGC
TTTAGTCCCGTCAACTTCAGTTCACTCTCTTAGAAGCAAAAGCACCCGAA
GTTTGAAGACCTTTTGCTCAGCTAAAATTCCCAATCCCATGCCAGCACAC
ATTAATCCTAACGACCCCTTTCTTTCTAAACTCGCCGCTGCCGCGGCAGC
CTCTCCGGAAGCGTTTGTCAATCGTCCTTCCAATTCCGGTACGCTGCCGT
ATTTGGATATCTACGATTCTCCCACTCTTATGGCCTCCCCTGCCCAAGTG
GAAAGATCGGCTACATACAATGAACATAGGCCAGATACACCGCCTCCGGA
TTTGCCTTCGCTGCTTCTTCATGGGAGGATTGTATACATTGGCATGCCGT
TGGTGCCTGCTGTCACAGAGCTTGTTGTGGCAGAAACTGATGTACTTGCA
GTGGATGGATCCCAAGGCACCTATATATCTTTATATTAATTCCACGGGTA
CGACTCGTGATGAAGGTGAATCGGTTGGGATGGAGAGTGAAGGGTTTGCC
ATTTATGATACATTGATGCAAAATGAAGGGCGAGGGCACATACAGTTGGC
TGTTGGGAGCTGCTATAGGGATGGGTTGGTCAACTACTTGGTTGGTGGAA
CTAAAAGGAAAAGGGGTTATGAAGGCCTCAGGCCAAAATAATGATTACAC
AAACCCCGCCTTCCAATCATCTGGGGGTGCTGACCCGCAAAGGGAAGGTC
CTTTATTCCGCGGCACAAGAAGGAGAAGGGGAAAACAAAAGAACCCCTCT
TGGT
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