CX675466
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX675466 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2) HSP 1 Score: 217.624 bits (553), Expect = 5.793e-71 Identity = 107/137 (78.10%), Postives = 117/137 (85.40%), Query Frame = 2
Query: 122 KLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIXVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLASRKPRTA 532
KL L KAKRYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHI VNQA KQRRRTYRAHGRINPYMS+PCHIEL LS TQLA++ ++A
Sbjct: 38 KLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKSA 174 HSP 2 Score: 72.0182 bits (175), Expect = 5.793e-71 Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 3
Query: 12 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALK 122
MVKYS+EPDN TKSCKARGSDLRVHFKNTRE AHA++
Sbjct: 1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIR 37
BLAST of CX675466 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 2.850e-70 Identity = 107/138 (77.54%), Postives = 117/138 (84.78%), Query Frame = 2
Query: 122 KLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIXVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLASRKPRTAT 535
KL L KAKRYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHI VNQA KQRRRTYRAHGRINPYMS+PCHIEL LS TQLA++ + A+
Sbjct: 38 KLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKGAS 175 HSP 2 Score: 70.0922 bits (170), Expect = 2.850e-70 Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 3
Query: 12 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALK 122
MVKYS+EPDN TKSCKARG+DLRVHFKNTRE AHA++
Sbjct: 1 MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIR 37
BLAST of CX675466 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 2.374e-66 Identity = 102/115 (88.70%), Postives = 107/115 (93.04%), Query Frame = 2
Query: 122 KLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIXVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 466
K+ L KAKRYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHI VNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct: 38 KMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152 HSP 2 Score: 59.6918 bits (143), Expect = 2.374e-66 Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 3
Query: 12 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALK 122
MVKYS +P NPTKS KA G DLRVHFKNTRE A AL+
Sbjct: 1 MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALR 37
BLAST of CX675466 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.167e-65 Identity = 104/133 (78.20%), Postives = 113/133 (84.96%), Query Frame = 2
Query: 122 KLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIXVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLASRK 520
KL LTKAKRYLEDV+AHKQAIPF R+C GVGRTAQAK+R+ NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHI VNQAQKQRRRTYRAHGRINPYMSSPCHIEL LS +A+RK
Sbjct: 38 KLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170 HSP 2 Score: 62.003 bits (149), Expect = 1.167e-65 Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 3
Query: 12 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALK 122
MVKYS+EP NPTKS KA G DLRVHFKNTRE A AL+
Sbjct: 1 MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALR 37
BLAST of CX675466 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 3.375e-65 Identity = 102/133 (76.69%), Postives = 110/133 (82.71%), Query Frame = 2
Query: 122 KLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIXVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLASRK 520
++ L KAKRYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHI VNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS +A RK
Sbjct: 38 RMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRK 170 HSP 2 Score: 61.2326 bits (147), Expect = 3.375e-65 Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 3
Query: 12 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALK 122
MVKYS++P NPTKS KA G DLRVHFKNTRE A AL+
Sbjct: 1 MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALR 37
BLAST of CX675466 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 2.935e-51 Identity = 82/115 (71.30%), Postives = 94/115 (81.74%), Query Frame = 2
Query: 122 KLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIXVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 466
K+ + KA RYL+DV+A KQ IPF RFC GVGR AQAK + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HI VN+A RRRTYRAHGRINPYMSSPCHIE+ +S
Sbjct: 38 KMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAKAFK-HTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVS 151 HSP 2 Score: 60.4622 bits (145), Expect = 2.935e-51 Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 3
Query: 12 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALK 122
M KYS +P+NP KSCKARGS LRVHFKNTRE A A+K
Sbjct: 1 MGKYSIDPENPIKSCKARGSYLRVHFKNTRETAQAIK 37
BLAST of CX675466 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3) HSP 1 Score: 151.754 bits (382), Expect = 3.462e-49 Identity = 75/114 (65.79%), Postives = 89/114 (78.07%), Query Frame = 2
Query: 125 LSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIXVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 466
+ + KA +YL+DV KQ +PF R+ GVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HI VN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct: 39 MHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151 HSP 2 Score: 65.0846 bits (157), Expect = 3.462e-49 Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 3
Query: 12 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALK 122
MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A+K
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIK 37
BLAST of CX675466 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3) HSP 1 Score: 151.754 bits (382), Expect = 3.462e-49 Identity = 75/114 (65.79%), Postives = 89/114 (78.07%), Query Frame = 2
Query: 125 LSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIXVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 466
+ + KA +YL+DV KQ +PF R+ GVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HI VN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct: 39 MHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151 HSP 2 Score: 65.0846 bits (157), Expect = 3.462e-49 Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 3
Query: 12 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALK 122
MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A+K
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIK 37
BLAST of CX675466 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3) HSP 1 Score: 151.369 bits (381), Expect = 4.512e-49 Identity = 75/114 (65.79%), Postives = 89/114 (78.07%), Query Frame = 2
Query: 125 LSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIXVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 466
+ + KA +YL+DV KQ +PF R+ GVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HI VN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct: 39 MHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151 HSP 2 Score: 65.0846 bits (157), Expect = 4.512e-49 Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 3
Query: 12 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALK 122
MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A+K
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIK 37
BLAST of CX675466 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3) HSP 1 Score: 151.369 bits (381), Expect = 4.512e-49 Identity = 75/114 (65.79%), Postives = 89/114 (78.07%), Query Frame = 2
Query: 125 LSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIXVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 466
+ + KA +YL+DV KQ +PF R+ GVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HI VN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct: 39 MHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151 HSP 2 Score: 65.0846 bits (157), Expect = 4.512e-49 Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 3
Query: 12 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALK 122
MV+YS +P+NPTKSCK+RGS+LRVHFKNTRE A A+K
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIK 37 The following BLAST results are available for this feature:
BLAST of CX675466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675466 ID=CX675466; Name=CX675466; organism=Citrus sinensis; type=EST; length=717bpback to top |