CX675465
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675465 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2) HSP 1 Score: 219.935 bits (559), Expect = 2.163e-64 Identity = 109/137 (79.56%), Postives = 119/137 (86.86%), Query Frame = -3
Query: 300 KLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLASRKPRTA 710
KL L KAKRYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS ETQLA++ ++A
Sbjct: 38 KLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKSA 174 HSP 2 Score: 47.7506 bits (112), Expect = 2.163e-64 Identity = 20/23 (86.96%), Postives = 22/23 (95.65%), Query Frame = -1
Query: 710 CKARGSDLRVHFKNTREAAHALK 778
CKARGSDLRVHFKNTRE AHA++
Sbjct: 15 CKARGSDLRVHFKNTRETAHAIR 37
BLAST of CX675465 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 6.253e-64 Identity = 109/138 (78.99%), Postives = 119/138 (86.23%), Query Frame = -3
Query: 297 KLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLASRKPRTAT 710
KL L KAKRYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS ETQLA++ + A+
Sbjct: 38 KLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLAAKSKKGAS 175 HSP 2 Score: 46.595 bits (109), Expect = 6.253e-64 Identity = 19/23 (82.61%), Postives = 22/23 (95.65%), Query Frame = -1
Query: 710 CKARGSDLRVHFKNTREAAHALK 778
CKARG+DLRVHFKNTRE AHA++
Sbjct: 15 CKARGADLRVHFKNTRETAHAIR 37
BLAST of CX675465 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 2.339e-60 Identity = 103/115 (89.57%), Postives = 108/115 (93.91%), Query Frame = -3
Query: 366 KLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 710
K+ L KAKRYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct: 38 KMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152 HSP 2 Score: 37.3502 bits (85), Expect = 2.339e-60 Identity = 17/22 (77.27%), Postives = 18/22 (81.82%), Query Frame = -1
Query: 710 KARGSDLRVHFKNTREAAHALK 775
KA G DLRVHFKNTRE A AL+
Sbjct: 16 KAMGRDLRVHFKNTRETAFALR 37
BLAST of CX675465 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 5.646e-59 Identity = 105/133 (78.95%), Postives = 115/133 (86.47%), Query Frame = -3
Query: 312 KLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLASRK 710
KL LTKAKRYLEDV+AHKQAIPF R+C GVGRTAQAK+R+ NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LS + +A+RK
Sbjct: 38 KLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170 HSP 2 Score: 37.3502 bits (85), Expect = 5.646e-59 Identity = 17/22 (77.27%), Postives = 18/22 (81.82%), Query Frame = -1
Query: 710 KARGSDLRVHFKNTREAAHALK 775
KA G DLRVHFKNTRE A AL+
Sbjct: 16 KAMGRDLRVHFKNTRETAFALR 37
BLAST of CX675465 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 1.251e-58 Identity = 103/133 (77.44%), Postives = 112/133 (84.21%), Query Frame = -3
Query: 312 KLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLASRK 710
++ L KAKRYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS + +A RK
Sbjct: 38 RMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRK 170 HSP 2 Score: 36.965 bits (84), Expect = 1.251e-58 Identity = 17/22 (77.27%), Postives = 18/22 (81.82%), Query Frame = -1
Query: 710 KARGSDLRVHFKNTREAAHALK 775
KA G DLRVHFKNTRE A AL+
Sbjct: 16 KACGKDLRVHFKNTRETAFALR 37
BLAST of CX675465 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 1.535e-46 Identity = 83/115 (72.17%), Postives = 95/115 (82.61%), Query Frame = -3
Query: 366 KLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 710
K+ + KA RYL+DV+A KQ IPF RFC GVGR AQAK + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A RRRTYRAHGRINPYMSSPCHIE+ +S
Sbjct: 38 KMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAKAFK-HTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVS 151 HSP 2 Score: 42.3578 bits (98), Expect = 1.535e-46 Identity = 19/23 (82.61%), Postives = 20/23 (86.96%), Query Frame = -1
Query: 710 CKARGSDLRVHFKNTREAAHALK 778
CKARGS LRVHFKNTRE A A+K
Sbjct: 15 CKARGSYLRVHFKNTRETAQAIK 37
BLAST of CX675465 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 3.992e-44 Identity = 78/114 (68.42%), Postives = 89/114 (78.07%), Query Frame = -3
Query: 369 LSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKN-RNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 707
+ L KA RYL DV+ KQ IPF RF GVGR AQAKN + P QGRWP KSA+F++ LL+NAESNAEVK L+ DAL I HIQVN+A RRRTYRAHGRINPYM+SPCHIE+ L
Sbjct: 39 MHLKKALRYLNDVIEKKQIIPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEMFL 152 HSP 2 Score: 44.2838 bits (103), Expect = 3.992e-44 Identity = 19/23 (82.61%), Postives = 20/23 (86.96%), Query Frame = -1
Query: 710 CKARGSDLRVHFKNTREAAHALK 778
CKARG DLRVHFKNTRE A A+K
Sbjct: 15 CKARGEDLRVHFKNTRETAQAIK 37
BLAST of CX675465 vs. ExPASy Swiss-Prot
Match: RL17_ARGMO (60S ribosomal protein L17 OS=Argas monolakensis GN=RpL17 PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 2.549e-43 Identity = 76/115 (66.09%), Postives = 92/115 (80.00%), Query Frame = -3
Query: 366 KLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 710
++SL +A+RYL++V+A K+ +PF RF GVGR AQAK QGRWP KSA+F+ LL+NAESNA+ KGLDVD L I HIQVN+A K RRRTYRAHGRINPYMSSPCH+E+ LS
Sbjct: 38 RMSLRRAQRYLKNVIAKKEIVPFRRFNGGVGRKAQAKAWGCT-QGRWPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHVEVILS 151 HSP 2 Score: 43.8986 bits (102), Expect = 2.549e-43 Identity = 19/23 (82.61%), Postives = 21/23 (91.30%), Query Frame = -1
Query: 710 CKARGSDLRVHFKNTREAAHALK 778
CKARGS+LRVHFKNTRE A A+K
Sbjct: 15 CKARGSNLRVHFKNTRETAQAIK 37
BLAST of CX675465 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3) HSP 1 Score: 154.066 bits (388), Expect = 3.322e-43 Identity = 76/114 (66.67%), Postives = 90/114 (78.95%), Query Frame = -3
Query: 366 LSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 707
+ + KA +YL+DV KQ +PF R+ GVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct: 39 MHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151 HSP 2 Score: 42.743 bits (99), Expect = 3.322e-43 Identity = 18/23 (78.26%), Postives = 21/23 (91.30%), Query Frame = -1
Query: 710 CKARGSDLRVHFKNTREAAHALK 778
CK+RGS+LRVHFKNTRE A A+K
Sbjct: 15 CKSRGSNLRVHFKNTRETAQAIK 37
BLAST of CX675465 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3) HSP 1 Score: 154.066 bits (388), Expect = 3.322e-43 Identity = 76/114 (66.67%), Postives = 90/114 (78.95%), Query Frame = -3
Query: 366 LSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 707
+ + KA +YL+DV KQ +PF R+ GVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct: 39 MHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151 HSP 2 Score: 42.743 bits (99), Expect = 3.322e-43 Identity = 18/23 (78.26%), Postives = 21/23 (91.30%), Query Frame = -1
Query: 710 CKARGSDLRVHFKNTREAAHALK 778
CK+RGS+LRVHFKNTRE A A+K
Sbjct: 15 CKSRGSNLRVHFKNTRETAQAIK 37 The following BLAST results are available for this feature:
BLAST of CX675465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675465 ID=CX675465; Name=CX675465; organism=Citrus sinensis; type=EST; length=778bpback to top |