CN187648

Overview
NameCN187648
Unique NameCN187648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187648 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 5.135e-92
Identity = 168/191 (87.96%), Postives = 180/191 (94.24%), Query Frame = -2
Query:  201 LQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSYDELSDDGGVYEDSD 773
            LQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEK+LIGKYFEEISQDTGKYVFGV+DTLKALE+GAVE LIVWENLDINRY LKN+ TGEIVIKHL +DQE NQSNF DA T+AELEVQEK  LLEWFANEYK+FGC+LEFVTNKSQEGSQFCRGFGGIGG+LRYQLD+R++DELS DG VYEDSD
Sbjct:  246 LQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTGKYVFGVEDTLKALEMGAVETLIVWENLDINRYELKNNTTGEIVIKHLGKDQENNQSNFHDAETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGLLRYQLDMRTFDELS-DGEVYEDSD 435          
BLAST of CN187648 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 4.069e-89
Identity = 161/191 (84.29%), Postives = 178/191 (93.19%), Query Frame = -2
Query:  201 LQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSYDELSDDGGVYEDSD 773
            LQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEK+LIGKYFEEISQDTGKYVFGV+DTLKALE+GA+E LIVWENLDINRY LKNS TGE+V+KH  +DQE++ SNF D+ T+AELEVQEK  LLEWFANEYK+FGC+LEFVTNKSQEGSQFCRGFGGIGG+LRYQLD+R++DELSD   VYEDSD
Sbjct:  245 LQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTGKYVFGVEDTLKALEMGAIETLIVWENLDINRYELKNSTTGEMVVKHFGKDQESDTSNFHDSETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGMLRYQLDMRTFDELSDT-EVYEDSD 434          
BLAST of CN187648 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 305.449 bits (781), Expect = 2.162e-82
Identity = 151/189 (79.89%), Postives = 169/189 (89.42%), Query Frame = -2
Query:  207 LQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSYDELSDDGGVYED 773
            L AKILNVVDVSYGGENGFNQAIELSAEIL+NVKFIQEKRLIGKYFEEISQDTGKYVFGV+DTL ALE GA+E LIVWENLDINRYV+KNSATGE VIKHLN++QEAN  NF+ A +   L+V+EK SLLEW ANEY++FGC+LEFVTNKSQEGSQFCRGFGGIGGILRYQLD+ ++D  S+DG   +D
Sbjct:  247 LAAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKRLIGKYFEEISQDTGKYVFGVEDTLNALESGAIETLIVWENLDINRYVMKNSATGETVIKHLNKEQEANTENFKVADSDLALDVEEKLSLLEWLANEYRRFGCALEFVTNKSQEGSQFCRGFGGIGGILRYQLDMTAFD--SEDGEALDD 433          
BLAST of CN187648 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 9.423e-70
Identity = 130/189 (68.78%), Postives = 154/189 (81.48%), Query Frame = -2
Query:  207 LQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSYDELSDDGGVYED 773
            LQ KIL +VDVSYGGENGFNQAIELSAE+LSNVKFIQEK+LIG+YF+EISQDTGKY FGVDDTLKALE+GAVEILIVWENLD  RYVLKN  T E  I  L  DQE ++++F D  T  E+E+ E  SLLEWFAN YK+FG +LE VT++SQEGSQF +GFGGIGG+LRY++D +  +   DD  +Y+D
Sbjct:  246 LQVKILKLVDVSYGGENGFNQAIELSAEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVDDTLKALEMGAVEILIVWENLDTMRYVLKNHTTDEEKILFLKPDQEKDKTHFTDKDTGVEMEMVESCSLLEWFANNYKKFGSTLEIVTDRSQEGSQFVKGFGGIGGMLRYRIDFQGMEFNDDDPDLYDD 434          
BLAST of CN187648 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 4.097e-65
Identity = 124/192 (64.58%), Postives = 151/192 (78.65%), Query Frame = -2
Query:  207 LQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATG-EIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRS--YDELSDDGGVYED 773
            LQ+K++ +VDVSYGGENGFNQAIEL+AE L NVKFIQEK+LIG+YF+EISQDTGKY FGV+DTL+ALELG+VE LI WENLDI RYVLKN A      + HL  +QE ++S+F D  +  E+E+ E   LLEW AN YK FG +LE +T+KSQEGSQF RGFGGIGGILRY++D +S   DEL +DG   +D
Sbjct:  246 LQSKVIKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHANSTSTTVLHLTPEQEKDKSHFTDKESGVEMELIESQPLLEWLANNYKMFGATLEIITDKSQEGSQFVRGFGGIGGILRYKVDFQSMQLDELDNDGFDLDD 437          
BLAST of CN187648 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 245.743 bits (626), Expect = 2.033e-64
Identity = 123/191 (64.40%), Postives = 150/191 (78.53%), Query Frame = -2
Query:  201 LQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSYDELSDDGGVYEDSD 773
            LQ+K+L +VD+SYGGENGFNQAIELS E+LSNVKFIQEK+LIG+YF+EISQDTGKY FGV+DTLKALE+GAVEILIV+ENLDI RYVL    T E  I +L  +QE ++S+F D  T  E E+ E   LLEWFAN YK+FG +LE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D   ++  D
Sbjct:  246 LQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDD 436          
BLAST of CN187648 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 245.743 bits (626), Expect = 2.033e-64
Identity = 123/191 (64.40%), Postives = 150/191 (78.53%), Query Frame = -2
Query:  201 LQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSYDELSDDGGVYEDSD 773
            LQ+K+L +VD+SYGGENGFNQAIELS E+LSNVKFIQEK+LIG+YF+EISQDTGKY FGV+DTLKALE+GAVEILIV+ENLDI RYVL    T E  I +L  +QE ++S+F D  T  E E+ E   LLEWFAN YK+FG +LE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D   ++  D
Sbjct:  246 LQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDD 436          
BLAST of CN187648 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 245.743 bits (626), Expect = 2.033e-64
Identity = 123/191 (64.40%), Postives = 150/191 (78.53%), Query Frame = -2
Query:  201 LQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSYDELSDDGGVYEDSD 773
            LQ+K+L +VD+SYGGENGFNQAIELS E+LSNVKFIQEK+LIG+YF+EISQDTGKY FGV+DTLKALE+GAVEILIV+ENLDI RYVL    T E  I +L  +QE ++S+F D  T  E E+ E   LLEWFAN YK+FG +LE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D   ++  D
Sbjct:  246 LQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDD 436          
BLAST of CN187648 vs. ExPASy Swiss-Prot
Match: ERF1_MESAU (Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3)

HSP 1 Score: 245.743 bits (626), Expect = 2.033e-64
Identity = 123/191 (64.40%), Postives = 150/191 (78.53%), Query Frame = -2
Query:  201 LQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSYDELSDDGGVYEDSD 773
            LQ+K+L +VD+SYGGENGFNQAIELS E+LSNVKFIQEK+LIG+YF+EISQDTGKY FGV+DTLKALE+GAVEILIV+ENLDI RYVL    T E  I +L  +QE ++S+F D  T  E E+ E   LLEWFAN YK+FG +LE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D   ++  D
Sbjct:  246 LQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDD 436          
BLAST of CN187648 vs. ExPASy Swiss-Prot
Match: ERF1_HUMAN (Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3)

HSP 1 Score: 245.743 bits (626), Expect = 2.033e-64
Identity = 123/191 (64.40%), Postives = 150/191 (78.53%), Query Frame = -2
Query:  201 LQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSLLEWFANEYKQFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSYDELSDDGGVYEDSD 773
            LQ+K+L +VD+SYGGENGFNQAIELS E+LSNVKFIQEK+LIG+YF+EISQDTGKY FGV+DTLKALE+GAVEILIV+ENLDI RYVL    T E  I +L  +QE ++S+F D  T  E E+ E   LLEWFAN YK+FG +LE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D   ++  D
Sbjct:  246 LQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDD 436          
The following BLAST results are available for this feature:
BLAST of CN187648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ERF1Z_ARATH5.135e-9287.96Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH4.069e-8984.29Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH2.162e-8279.89Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_POLMI9.423e-7068.78Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DROME4.097e-6564.58Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT2.033e-6464.40Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT2.033e-6464.40Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MOUSE2.033e-6464.40Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MESAU2.033e-6464.40Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_HUMAN2.033e-6464.40Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004M17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187648 ID=CN187648; Name=CN187648; organism=Citrus sinensis; type=EST; length=774bp
TTTTTTTTTTTTTTTTTAAATGAATATAGATGTTGATTAAATCAATCTCA
TATCCAACAGATGGGCAGCTAAAATATGAAATAGTCAAAAGCAGTAATAT
CCCAAATTATTTTTTAGGAATCTCACAATGCAGTAGCAACAAAAATTCAT
CACACTTCGTACAAACGTTCACAGATCCTTCTGCTAGCTTTTTGTTTCTA
ATCAGAATCCTCATAAACACCTCCATCGTCAGATAGCTCATCATATGATC
TTATGTCAAGCTGGTAGCGAAGTATACCACCAATTCCACCAAACCCTCTG
CAAAACTGTGAGCCCTCCTGGGATTTGTTGGTAACAAACTCAAGCGAACA
ACCAAACTGTTTGTACTCATTGGCAAACCACTCGAGTAAAGATGTCTTTT
CCTGAACCTCCAACTCAGCAGATGTGGCTGCATCGCGGAAGTTGCTCTGA
TTGGCCTCTTGGTCTCTGTTTAAGTGCTTTATAACAATTTCACCAGTAGC
ACTGTTTTTCAGTACATATCTATTGATATCCAGATTTTCCCACACAATAA
GGATTTCTACAGCACCCAATTCCAGAGCCTTCAAAGTGTCATCAACACCA
AACACATATTTTCCAGTGTCCTGACTAATCTCCTCAAAGTATTTTCCAAT
CAAACGTTTTTCTTGTATGAACTTCACATTTGATAAGATTTCTGCAGACA
ACTCAATTGCTTGGTTAAAACCATTTTCCCCACCATAAGAAACATCAACA
ACATTCAATATCTTGGCTTGTAAA
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