CX675461
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDA6_ARATH (Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 1.237e-41 Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = -2 Query: 590 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEE 826 ETAVAVGVEPDNKLPYNEY+EYFGPDYTLHV+P MENLN KDME+IRNTLLEQLSGLIHAPSV FQ TP +V +E Sbjct: 327 ETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVDPSPMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDE 405 HSP 2 Score: 56.9954 bits (136), Expect = 1.237e-41 Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = -3 Query: 307 PEEDMERRPKPRIWNG-EDYESDHDEDDKPPHMANFDDHMMRDGADDMDEEKSDGHPSP 480 PE+DME RPKPRIW+G YESD D+DDKP H + D ++E D +P P Sbjct: 406 PEDDMETRPKPRIWSGTATYESDSDDDDKPLHGYSCRGGATTDRDSTGEDEMDDDNPEP 464
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDA19_ARATH (Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 1.272e-22 Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = -2 Query: 593 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPE 826 ET VA+GVE ++K+P +EYYEYFGPDYTLHV P NMEN N+ + +E+IRN LL LS L HAPSVPFQ P T+ PE Sbjct: 323 ETGVALGVEVEDKMPEHEYYEYFGPDYTLHVAPSNMENKNSRQMLEEIRNDLLHNLSKLQHAPSVPFQERPPDTETPE 400
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDA19_MAIZE (Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.001e-19 Identity = 46/83 (55.42%), Postives = 58/83 (69.88%), Query Frame = -2 Query: 578 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEEVSSQ 826 ET VA+G EP++K+P NEYYEYFGPDYTLHV P NMEN N + ++ IR+ +LS L HAPSV FQ T++PE+ Q Sbjct: 328 ETGVALGQEPEDKMPVNEYYEYFGPDYTLHVAPSNMENKNTRQQLDDIRS----KLSKLRHAPSVHFQERVPDTEIPEQDEDQ 406
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDA7_ARATH (Histone deacetylase 7 OS=Arabidopsis thaliana GN=HDA7 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.455e-18 Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = -2 Query: 593 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPE 826 ETA+AVG + DN LP N+Y +YF PDY LH+ P N +NLN D+ +R TLL QLS ++HAPSVPFQ TP+++Q E Sbjct: 318 ETAIAVGEQLDNDLPGNDYMKYFRPDYKLHILPTNRQNLNTRLDIITMRETLLAQLSLVMHAPSVPFQDTPSSSQATE 395
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDAC1_RAT (Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16 Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = -2 Query: 590 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEE 826 ETAVA+ E N+LPYN+Y+EYFGPD+ LH+ P NM N N ++ +EKI+ L E L L HAP V Q P +PEE Sbjct: 315 ETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEE 392
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDAC1_PONAB (Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16 Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = -2 Query: 590 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEE 826 ETAVA+ E N+LPYN+Y+EYFGPD+ LH+ P NM N N ++ +EKI+ L E L L HAP V Q P +PEE Sbjct: 315 ETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEE 392
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDAC1_MOUSE (Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16 Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = -2 Query: 590 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEE 826 ETAVA+ E N+LPYN+Y+EYFGPD+ LH+ P NM N N ++ +EKI+ L E L L HAP V Q P +PEE Sbjct: 315 ETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEE 392
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDAC1_HUMAN (Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16 Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = -2 Query: 590 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEE 826 ETAVA+ E N+LPYN+Y+EYFGPD+ LH+ P NM N N ++ +EKI+ L E L L HAP V Q P +PEE Sbjct: 315 ETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEE 392
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDAC1_BOVIN (Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16 Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = -2 Query: 590 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEE 826 ETAVA+ E N+LPYN+Y+EYFGPD+ LH+ P NM N N ++ +EKI+ L E L L HAP V Q P +PEE Sbjct: 315 ETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEE 392
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDAC1_DROME (Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 3.963e-16 Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = -2 Query: 614 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTP 826 ET+VA+ VE N+LPYN+Y+EYFGPD+ LH+ P NM N N + +EKI+N L E L L HAP V Q P Sbjct: 313 ETSVALAVEIANELPYNDYFEYFGPDFKLHISPSNMTNQNTSEYLEKIKNRLFENLRMLPHAPGVQIQAIP 383 The following BLAST results are available for this feature:
BLAST of CX675461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675461 ID=CX675461; Name=CX675461; organism=Citrus sinensis; type=EST; length=827bpback to top |