CX675461

Overview
NameCX675461
Unique NameCX675461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDA6_ARATH (Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.237e-41
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = -2
Query:  590 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEE 826
            ETAVAVGVEPDNKLPYNEY+EYFGPDYTLHV+P  MENLN  KDME+IRNTLLEQLSGLIHAPSV FQ TP   +V +E
Sbjct:  327 ETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVDPSPMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDE 405          

HSP 2 Score: 56.9954 bits (136), Expect = 1.237e-41
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = -3
Query:  307 PEEDMERRPKPRIWNG-EDYESDHDEDDKPPHMANFDDHMMRDGADDMDEEKSDGHPSP 480
            PE+DME RPKPRIW+G   YESD D+DDKP H  +       D     ++E  D +P P
Sbjct:  406 PEDDMETRPKPRIWSGTATYESDSDDDDKPLHGYSCRGGATTDRDSTGEDEMDDDNPEP 464          
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDA19_ARATH (Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.272e-22
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = -2
Query:  593 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPE 826
            ET VA+GVE ++K+P +EYYEYFGPDYTLHV P NMEN N+ + +E+IRN LL  LS L HAPSVPFQ  P  T+ PE
Sbjct:  323 ETGVALGVEVEDKMPEHEYYEYFGPDYTLHVAPSNMENKNSRQMLEEIRNDLLHNLSKLQHAPSVPFQERPPDTETPE 400          
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDA19_MAIZE (Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.001e-19
Identity = 46/83 (55.42%), Postives = 58/83 (69.88%), Query Frame = -2
Query:  578 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEEVSSQ 826
            ET VA+G EP++K+P NEYYEYFGPDYTLHV P NMEN N  + ++ IR+    +LS L HAPSV FQ     T++PE+   Q
Sbjct:  328 ETGVALGQEPEDKMPVNEYYEYFGPDYTLHVAPSNMENKNTRQQLDDIRS----KLSKLRHAPSVHFQERVPDTEIPEQDEDQ 406          
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDA7_ARATH (Histone deacetylase 7 OS=Arabidopsis thaliana GN=HDA7 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.455e-18
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = -2
Query:  593 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPE 826
            ETA+AVG + DN LP N+Y +YF PDY LH+ P N +NLN   D+  +R TLL QLS ++HAPSVPFQ TP+++Q  E
Sbjct:  318 ETAIAVGEQLDNDLPGNDYMKYFRPDYKLHILPTNRQNLNTRLDIITMRETLLAQLSLVMHAPSVPFQDTPSSSQATE 395          
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDAC1_RAT (Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = -2
Query:  590 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEE 826
            ETAVA+  E  N+LPYN+Y+EYFGPD+ LH+ P NM N N ++ +EKI+  L E L  L HAP V  Q  P    +PEE
Sbjct:  315 ETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEE 392          
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDAC1_PONAB (Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = -2
Query:  590 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEE 826
            ETAVA+  E  N+LPYN+Y+EYFGPD+ LH+ P NM N N ++ +EKI+  L E L  L HAP V  Q  P    +PEE
Sbjct:  315 ETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEE 392          
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDAC1_MOUSE (Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = -2
Query:  590 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEE 826
            ETAVA+  E  N+LPYN+Y+EYFGPD+ LH+ P NM N N ++ +EKI+  L E L  L HAP V  Q  P    +PEE
Sbjct:  315 ETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEE 392          
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDAC1_HUMAN (Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = -2
Query:  590 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEE 826
            ETAVA+  E  N+LPYN+Y+EYFGPD+ LH+ P NM N N ++ +EKI+  L E L  L HAP V  Q  P    +PEE
Sbjct:  315 ETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEE 392          
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDAC1_BOVIN (Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = -2
Query:  590 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEE 826
            ETAVA+  E  N+LPYN+Y+EYFGPD+ LH+ P NM N N ++ +EKI+  L E L  L HAP V  Q  P    +PEE
Sbjct:  315 ETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDA-IPEE 392          
BLAST of CX675461 vs. ExPASy Swiss-Prot
Match: HDAC1_DROME (Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.963e-16
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = -2
Query:  614 ETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTP 826
            ET+VA+ VE  N+LPYN+Y+EYFGPD+ LH+ P NM N N  + +EKI+N L E L  L HAP V  Q  P
Sbjct:  313 ETSVALAVEIANELPYNDYFEYFGPDFKLHISPSNMTNQNTSEYLEKIKNRLFENLRMLPHAPGVQIQAIP 383          
The following BLAST results are available for this feature:
BLAST of CX675461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
HDA6_ARATH1.237e-4181.01Histone deacetylase 6 OS=Arabidopsis thaliana GN=H... [more]
HDA19_ARATH1.272e-2264.10Histone deacetylase 19 OS=Arabidopsis thaliana GN=... [more]
HDA19_MAIZE5.001e-1955.42Probable histone deacetylase 19 OS=Zea mays PE=2 S... [more]
HDA7_ARATH1.455e-1856.41Histone deacetylase 7 OS=Arabidopsis thaliana GN=H... [more]
HDAC1_RAT3.034e-1651.90Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac... [more]
HDAC1_PONAB3.034e-1651.90Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=... [more]
HDAC1_MOUSE3.034e-1651.90Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=... [more]
HDAC1_HUMAN3.034e-1651.90Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=... [more]
HDAC1_BOVIN3.034e-1651.90Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 ... [more]
HDAC1_DROME3.963e-1654.93Histone deacetylase Rpd3 OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62D08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62D08-H16-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675461 ID=CX675461; Name=CX675461; organism=Citrus sinensis; type=EST; length=827bp
TTTTTAGAACAAAATTCGACCTAATTATCACCTATATGAATGTTTTTTCT
GCACAGTTTTGTCTTACAGTTTTGGTACTCTGTTTGCATTTTGGATGCAC
CTAACACACTTAAAAGTATAAAGTTTAAACAAAAAGGGGCATTTTTACCC
CATTTGCATTGCCTATACTAATGCCCATCAAAAGGATCTAACAAGAAATC
CCTACTGGAAAAATACACTGGCTTGAAAGAGTTAGTTCCCAGATGAGAGG
AGGTCTCATGTCTACAAGGAAATTGGAAGCTACAATACAAAGTTCCACTA
ATGTCTAGGTGATGGATGTCCATCCGATTTCTCTTCATCCATGTCATCTG
CACCATCCCTCATCATGTGATCATCAAAATTTGCCATGTGTGGAGGCTTA
TCATCTTCATCATGGTCTGACTCATAATCCTCACCATTCCAGATGCGAGG
TTTTGGTCTTCGCTCCATGTCCTCTTCCGGCTACATCCAATCATAATCAC
ATATGACCAAAACAAAAAGAGATATAATCAAGGGAAAAAAATGCAATACC
AAACTAAATAATAATGTAAATTTGGCACTGGCTACTAACCTCTTCGGGAA
CTTGGGTAGTGGCTGGTGTTGTCTGGAATGGTACACTGGGGGCATGAATT
AGTCCAGACAGTTGCTCAAGTAGTGTGTTCCTTATCTTCTCCATATCTTT
GTGTGCGTTTAGGTTCTCCATGTTGCATGGTTCAACATGAAGAGTGTAAT
CTGGTCCAAAGTACTCATAGTATTCATTGTAAGGCAATTTATTATCAGGT
TCTACTCCAACTGCGACAGCTGTCTCG
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