EY665929

Overview
NameEY665929
Unique NameEY665929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY665929 vs. ExPASy Swiss-Prot
Match: YIPC_SCHPO (Uncharacterized WD repeat-containing protein C343.04c OS=Schizosaccharomyces pombe GN=SPAC343.04c PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.109e-12
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 2 
Query:   26 LQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKH--RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRPWDVNSGECLHVYEKTGVGLISCGWFLHGGGIFAAMTDQSTLPARICHAT 370
            + +SH+G+YLAS+SKD++AII++V     V+LK   RL GH   V  + WSP+D  LL+C  ++++  WD  +GE L  Y K G  +  C W   G        D        CH T
Sbjct:  219 ISYSHNGRYLASASKDKTAIIFDV-----VNLKRVFRLIGHIDTVAYIRWSPDDRYLLSCSCDKSVILWDAFTGEKLRDY-KHGFSVSCCCWLPDGLSFITGSPD--------CHIT 321
The following BLAST results are available for this feature:
BLAST of EY665929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YIPC_SCHPO4.109e-1237.61Uncharacterized WD repeat-containing protein C343.... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-007-D12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665929 ID=EY665929; Name=EY665929; organism=Citrus sinensis; type=EST; length=781bp
ACCACCAGTGATGACCCCCTTGTTTTTGCAATTTTCACATGATGGGAAAT
ATTTGGCCTCATCATCCAAGGATCAGTCAGCAATTATATGGGAGGTAAAA
GAGGATGGTCAGGTGTCACTGAAGCATAGACTAAGTGGTCACCGGAAACC
AGTGTTTACAGTATCATGGAGCCCTAATGACCATCAACTTCTTACTTGTG
GACAAGAGGAGGCTATCAGGCCCTGGGATGTTAATTCTGGAGAATGTCTC
CATGTTTACGAGAAAACTGGTGTTGGCCTGATTTCTTGTGGATGGTTTCT
ACATGGTGGAGGAATTTTTGCTGCAATGACTGACCAGAGCACTCTGCCTG
CGCGGATTTGCCATGCGACAAAGAGCTGGAACTCCCGCACCACGGCTGAG
TGATGCTCGACAACTACTCCTAACATGCGCTCGCCCCCCCATCCAGCGGC
ACCGGAAAATTCCTAACGCCCCATGCCGCCACCAGCCCTGTCTCAATCCC
CCCTTGCGTCCCCCACGGCGGCGGGTAGTTCTGCGCAGCACGGGAGGGGC
TCGGAGACCGACGCACCGCCCCGGTCCTTGGCCCCCCCCCCCCACGCCTC
CATCCAAACAGCGAGCCACGCTCTTCTCACCCAAATCACGGGCGGCGCCC
GCAGCTCAAGGACAGGGGACATACAACGAACGTACTACACGCCATAAGTA
CATCCGCGTGCGTGATCCCTCCGCTCTCACCGAGACCGCCGCCGCCATCC
GATCCACGCTTTGCCCGACGCTGCGCACCTT
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