CK938241

Overview
NameCK938241
Unique NameCK938241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938241 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.806e-60
Identity = 127/219 (57.99%), Postives = 139/219 (63.47%), Query Frame = 1
Query:  166 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPAS-------------------------------------------------KYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGFNC 675
            M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+S                                                 +YGGGKAATA AN LNKEFG KLKE MQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+TGT+MRRKMWLQNM                   SVCHGF C
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIIIALILIIVLSVCHGFKC 219          
BLAST of CK938241 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 8.164e-60
Identity = 126/221 (57.01%), Postives = 139/221 (62.90%), Query Frame = 1
Query:  166 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPAS-------------------------------------------------KYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGFNCGK 681
            M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+S                                                 +YGGGKAATA AN LNKEFG KLKE MQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+ GT+MRRKMW QNM                   S+C GFNCGK
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIALILIIILSICGGFNCGK 221          
BLAST of CK938241 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 9.027e-59
Identity = 123/219 (56.16%), Postives = 136/219 (62.10%), Query Frame = 1
Query:  166 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPAS-------------------------------------------------KYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGFNC 675
            M Q+SLIY+FVARG V+LAEYTEF GNF S+A QCLQKLP+S                                                 +YGGGKA+TA AN LNKEFG KLKE MQYC DHPEEISKL+KVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+ GTKM+RK+W +NM                   SVCHGF C
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVALILIIILSVCHGFKC 219          
BLAST of CK938241 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 1.103e-56
Identity = 120/219 (54.79%), Postives = 134/219 (61.19%), Query Frame = 1
Query:  166 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPAS-------------------------------------------------KYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGFNC 675
            M Q++LIY+FVARG V+L EYTEF GNF ++A QCLQKLP+S                                                 +YGGGKA TA AN LN+EFG KLKE MQYCVDHP+EISKLAKVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+ GTK+RRKMW +NM                   SVC GF C
Sbjct:   66 MGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIIITLILIIILSVCGGFKC 284          
BLAST of CK938241 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 8.468e-49
Identity = 105/220 (47.73%), Postives = 126/220 (57.27%), Query Frame = 1
Query:  166 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPAS--------------------------------------------------KYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGFNC 675
            M Q+S IY+FVARG ++LAEYTEF+GNF SIA QCLQKLP+S                                                  +YGGGKA+TA A  LNKEFGP +KE M Y VDH EEI KL KVKAQVSEVK +M+ENI+K +DRGE + +L DKTENL  QAQ+++  GT++RRK+W QNM                   SVCHGFNC
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLGILLLLVLIIWISVCHGFNC 220          
BLAST of CK938241 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.770e-38
Identity = 96/221 (43.44%), Postives = 114/221 (51.58%), Query Frame = 1
Query:  166 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPAS-------------------------------------------------KYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGFNCGK 681
            M+Q+SL Y+F+ARG V+L E+T+F GNF S+A Q L+ LP+S                                                 +YGG KAAT  AN LNKEFG  LKE MQYC+DHP+EIS LAK KAQVSEVK +MMENIEKVL RG   E+L     +   Q Q F    T+M+RK W QNM                   SVC GFNCGK
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEML----GSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK 217          
BLAST of CK938241 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  325 ANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHGFNC 675
            A  L++EFGP LKE MQYC+ HPEE+SKL+K+KAQ++EVKG+MM+NIEKVLDRGEKIELLVDKTENL  QA  F+  G ++RRKMWLQ++                     C GF C
Sbjct:  122 AYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVFSFILIVWVVACGGFKC 238          
BLAST of CK938241 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.034e-18
Identity = 63/213 (29.58%), Postives = 96/213 (45.07%), Query Frame = 1
Query:  178 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPAS--------------------------------------------------KYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHG 666
            ++I+A VARG VVL+E++  S N +SI+ Q L+KLP +                                                  K  G    +A A  +N EF   L + M++  + P    +++++K ++S+V+ VM+ENI+KVLDRGE++ELLVDKTEN+      FR    + R  MW +N+                    VCHG
Sbjct:    2 AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAIHSAQAYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKLTIALILVLALVVYIAMAFVCHG 213          
BLAST of CK938241 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.532e-18
Identity = 56/188 (29.79%), Postives = 90/188 (47.87%), Query Frame = 1
Query:  178 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPAS--------------------------------------------------KYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQN 591
            +++YA VARG VVLAE++  +GN  ++  + L+KL                                                     K  G  A  APA  +N EF   L + M++   +P  +  L +V+ +VSE++ VM+ENIEK+++RG++IELLVDKT  +   +  FR    ++RR +W++N
Sbjct:    2 AIVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSDGLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGKVAHNAPAYAMNDEFSRVLHQQMEFFSSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKN 188          
BLAST of CK938241 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.319e-17
Identity = 63/212 (29.72%), Postives = 97/212 (45.75%), Query Frame = 1
Query:  178 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLP-----------------------------ASKYGG-------------------GKAA-TAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXXSVCHG 666
            +++YA VARG VVL+E+T  S N ++IA Q L+K+P                             A +  G                   G+A  TA A  +N+EF   L + + Y  + P    ++ ++K ++++V+GVM+ENI+KVLDRGE++ELLVDKT N+      FR    + R  +W +N                     +CHG
Sbjct:    2 AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRAVHTALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVLLILLLLVIIYIAVAFLCHG 212          
The following BLAST results are available for this feature:
BLAST of CK938241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
VA721_ARATH2.806e-6057.99Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA722_ARATH8.164e-6057.01Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA726_ARATH9.027e-5956.16Putative vesicle-associated membrane protein 726 O... [more]
VA725_ARATH1.103e-5654.79Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA724_ARATH8.468e-4947.73Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA723_ARATH1.770e-3843.44Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA727_ARATH1.604e-3157.26Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA713_ARATH2.034e-1829.58Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA714_ARATH4.532e-1829.79Vesicle-associated membrane protein 714 OS=Arabido... [more]
VA711_ARATH1.319e-1729.72Vesicle-associated membrane protein 711 OS=Arabido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004476_B12 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0002_IIF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938241 ID=CK938241; Name=CK938241; organism=Citrus sinensis; type=EST; length=864bp
CGGGGCTCTCTCTCTCTCTCTCTCTCGCGTAAAAAAAGCAAAGCATAGCA
ACAAACAAAATTGGAGAGGAGAGAGAGACCTCTTGGAGCTTTAAAACAAA
ATAAAAAAATAAAAACAAGCCCAGATCTCATCTCATCTCAACTCAACTCA
ATTAGTCTCATCAAAATGAGCCAGAAATCGCTGATCTACGCCTTCGTGGC
GCGCGGAAATGTTGTGCTTGCTGAGTACACTGAGTTCAGTGGCAATTTCA
ACTCCATAGCCTATCAGTGCCTCCAGAAACTCCCTGCTTCCAAATATGGG
GGTGGAAAGGCTGCCACGGCTCCTGCCAATGGCCTGAACAAGGAATTTGG
ACCAAAATTGAAAGAACTTATGCAGTACTGTGTTGATCATCCTGAGGAGA
TCAGCAAGCTTGCGAAGGTTAAGGCTCAGGTTTCAGAAGTCAAAGGTGTT
ATGATGGAGAATATTGAAAAGGTTTTAGATAGGGGGGAAAAGATTGAGCT
ACTGGTCGATAAGACTGAGAACCTTCATCAGCAGGCACAAGACTTTCGGA
GTACGGGGACCAAAATGCGGAGGAAAATGTGGCTGCAAAATATGAAGATC
AAGCTGATTGTTTTGGGAATACTGATTGCCTTGATCCTCATCATAGTCCT
CTCTGTTTGCCATGGTTTCAACTGCGGAAAATGAGTGCTATTCTCCAGGA
GGCTTATATTACGCTCTTCTAAGAGCTTCTGTGATGATATTGTGAAAGAG
ATATATAAATATATATGATCTTGACTTTGTATTTAGTCTAAAAAAGTTAG
CAGTTTCCCTATATTTGTTACAAAGAAAACCGAAAACTTATTTTTGCTTG
TGAATGAGNNNNGT
back to top