CX675454

Overview
NameCX675454
Unique NameCX675454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9531 contig Csv1_Contig9531:160..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675454 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.433e-42
Identity = 87/129 (67.44%), Postives = 95/129 (73.64%), Query Frame = -1
Query:  247 IPLPNVTGKILAKVVEYCKKHVEVPA---TPDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 624
            IPLPNVT KIL+KV+EYCK+HVE      T                  +EDLK+WD++F+KVDQ TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP        ENQWAFE
Sbjct:   43 IPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of CX675454 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.292e-41
Identity = 84/126 (66.67%), Postives = 94/126 (74.60%), Query Frame = -1
Query:  247 IPLPNVTGKILAKVVEYCKKHVEVPATPDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 624
            +PLPNVT KILAKV+EYCK+HVE  A+                  ++DLK+WD DF+K+DQATLF+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNIKNDFTP        ENQWAFE
Sbjct:   42 VPLPNVTSKILAKVIEYCKRHVEAAASK-------AEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of CX675454 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.040e-35
Identity = 76/126 (60.32%), Postives = 89/126 (70.63%), Query Frame = -1
Query:  247 IPLPNVTGKILAKVVEYCKKHVEVPATPDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 624
            IPLPNVTG ILAKV+EYCKKHVE  A                    ++LK+WD++FVKVDQ TLFDLILAANYLNI GLLDLTC+ VAD ++GKTPE++R  FNIKND+TP        EN+WAFE
Sbjct:   44 IPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAE------NDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of CX675454 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.159e-35
Identity = 77/126 (61.11%), Postives = 86/126 (68.25%), Query Frame = -1
Query:  247 IPLPNVTGKILAKVVEYCKKHVEVPATPDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 624
            IPL NV  KIL KV+EYCKKH    A P                 EEDL +WD  F+ ++Q+T+F+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNI+NDFTP        ENQWAFE
Sbjct:   42 IPLANVESKILVKVIEYCKKHHVDEANP---------------ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CX675454 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.368e-34
Identity = 73/126 (57.94%), Postives = 85/126 (67.46%), Query Frame = -1
Query:  247 IPLPNVTGKILAKVVEYCKKHVEVPATPDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 624
            IPLPNVTG ILAKV+EYCKKHVE  A                     +LK+WD DFVKVD  TLFDL+ AANYLNI GLLDLTC+ VAD ++GKTP ++R+ FNIKND+TP        EN+WAFE
Sbjct:   44 IPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSTE------NHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of CX675454 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.730e-34
Identity = 75/126 (59.52%), Postives = 84/126 (66.67%), Query Frame = -1
Query:  247 IPLPNVTGKILAKVVEYCKKHVEVPATPDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 624
            IPL NV  KIL KV+EYCKK+    A P                 EEDL  WD  F+ ++Q+T+F+LILAANYLNIK L DLTCQTVADMIKGKTPEEIR TFNI+NDFTP        ENQWAFE
Sbjct:   42 IPLANVESKILVKVIEYCKKYHVDEANP---------------ISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CX675454 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.553e-31
Identity = 69/126 (54.76%), Postives = 84/126 (66.67%), Query Frame = -1
Query:  247 IPLPNVTGKILAKVVEYCKKHVEVPATPDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 624
            +PLPNV   IL KV+++C  H + P  P+                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:   45 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX675454 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.553e-31
Identity = 69/126 (54.76%), Postives = 84/126 (66.67%), Query Frame = -1
Query:  247 IPLPNVTGKILAKVVEYCKKHVEVPATPDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 624
            +PLPNV   IL KV+++C  H + P  P+                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:   45 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX675454 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.553e-31
Identity = 69/126 (54.76%), Postives = 84/126 (66.67%), Query Frame = -1
Query:  247 IPLPNVTGKILAKVVEYCKKHVEVPATPDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 624
            +PLPNV   IL KV+++C  H + P  P+                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:   45 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CX675454 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.553e-31
Identity = 69/126 (54.76%), Postives = 84/126 (66.67%), Query Frame = -1
Query:  247 IPLPNVTGKILAKVVEYCKKHVEVPATPDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 624
            +PLPNV   IL KV+++C  H + P  P+                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:   45 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
The following BLAST results are available for this feature:
BLAST of CX675454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SKP1B_ARATH7.433e-4267.44SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH6.292e-4166.67SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH1.040e-3560.32SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH5.159e-3561.11SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK3_ARATH4.368e-3457.94SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK12_ARATH9.730e-3459.52SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_XENLA1.553e-3154.76S-phase kinase-associated protein 1 OS=Xenopus lae... [more]
SKP1_RAT1.553e-3154.76S-phase kinase-associated protein 1 OS=Rattus norv... [more]
SKP1_PONAB1.553e-3154.76S-phase kinase-associated protein 1 OS=Pongo abeli... [more]
SKP1_MOUSE1.553e-3154.76S-phase kinase-associated protein 1 OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62D03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62D03-H6-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675454 ID=CX675454; Name=CX675454; organism=Citrus sinensis; type=EST; length=624bp
TTTTTTTTTTTTTTAGTCAAATTCAATGATCCAACGGTCTTGATAGCAAG
CAGGAAAGGATGGACCAGACCAACTGCTACCAGTTCCACCAGAACAGACT
ATTATTTACATTTCAAACAGCTAATAAGTTCGAAAGTACAATGAGAAAGG
AAAAGATAAGCCCTAGAAAACTACATCTACATGTTAAAGACAGCAAGATT
GCAAGACAATGATAATGAAAAATTGTCTTTGTTGAAACAACTTTCACTCA
AAAGCCCACTGGTTCTCCCTACGGACCTCTTCTTCCTCCTCTGGAGTGAA
GTCATTCTTGATGTTAAAGGTCTTTCGAATCTCCTCCGGAGTCTTTCCCT
TGATCATGTCAGCAACAGTCTGGCAGGTAAGGTCCAGCAGCCCCTTGATG
TTCAGGTAGTTTGCTGCCAGGATGAGATCGAAGAGAGTGGCCTGGTCAAC
TTTGACGAAGTCCGTGTCCCAGCTTTTGAGATCCTCCTCACCACCGTTAG
TGGCAGTACCGTTGCTGTTGGCGCCGCTGTTGTTGCTATCCGGGGTCGCA
GGAACCTCCACGTGTTTCTTGCAATACTCAACCACCTTCGCCAGGATCTT
GCCCGTCACGTTCGGTAACGGGAT
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