CX675442

Overview
NameCX675442
Unique NameCX675442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675442_ssr114 microsatellite CX675442_ssr114:114..128. BLAST: Citrus ESTs to Prunus persica proteins V1
CX675442_ssr533 microsatellite CX675442_ssr533:533..544. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5500 contig Csv1_Contig5500:1..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX675442 vs. ExPASy Swiss-Prot
Match: CAP10_ARATH (Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.095e-25
Identity = 72/164 (43.90%), Postives = 82/164 (50.00%), Query Frame = -2 
Query:  425 VEQPTSVAPTQGKGTAGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALR-RNSQNASYSTWGPQPIAGPTMQPNGHDPFYASGMVSAPHSVQMA-----AMANXXXXXXXXXXXXXXXXXXXXXQTSNPFANPYAANVHPYGSGMPVQAYNPYTGLM 898
            VEQP S        + GWELALVTAPSSNE A A SKLAGGLDKLTLDSLY+DA+R    QN SY+ W   P+    M    H PFYAS  V+AP   QMA                                +NPF NP+ +N    G+    Q YNPY   M
Sbjct:  388 VEQPHSTTDFTNGNSTGWELALVTAPSSNEGAAADSKLAGGLDKLTLDSLYEDAIRVSQQQNRSYNPWEQNPVHNGHMM---HQPFYASNGVAAPQPFQMANQNHQTFGYQHQNAGMMMGPVQQPYQQQQQNMNNPFGNPFVSN----GNPQQPQGYNPYPRYM 544
[Close]
BLAST of CX675442 vs. ExPASy Swiss-Prot
Match: CAP8_ARATH (Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.784e-12
Identity = 45/96 (46.88%), Postives = 51/96 (53.12%), Query Frame = -2 
Query:  605 QPTSVAPTQGKGTAGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALRRNSQNASYSTWGPQPIAGPTMQPNGHDPFYASGMVSAPHSVQ 892
            QP +  PT      GWELALVTAPSS+ +A+   KLAGGLD LTL SLYDD     SQ   Y    P P A        HDPF +S   + P   Q
Sbjct:  416 QPNNYDPT------GWELALVTAPSSDISASTERKLAGGLDTLTLSSLYDDGAYIASQRPVYGAPAPNPFA-------SHDPFASSNGTAPPPQQQ 498
The following BLAST results are available for this feature:
BLAST of CX675442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CAP10_ARATH4.095e-2543.90Putative clathrin assembly protein At5g35200 OS=Ar... [more]
CAP8_ARATH1.784e-1246.88Putative clathrin assembly protein At2g01600 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_62C07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62C07-F14-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675442 ID=CX675442; Name=CX675442; organism=Citrus sinensis; type=EST; length=902bp
TTTCACCAATCTCAAACGTAATGTCTCATTGATATGAATGTGGTACATCA
CAAAGATTACAGCTCTTTTTTTATCATCTACAAGAAAATCTTACCAGAGC
TGTCCAAGGAAAAAATAATAATAATAATAAACAAGAATAAGATTCCTGCC
CGAGCATCAACAACTTCAAACAGGTAAAAAAATATTAGGCAGTTTAGAAA
ACTATTATTATCCACTTGTCAAGATAAATAATCAACAATCAAGAAACCTC
CCTTTCACTAATTATTTAAGAAAGAATCTCATTCTAGCTAACACTGCACA
ACATATGGTACACGACGATCTATTCTTGAAACATTCCCGCATTTTGAAAT
CCTCAACCAACTATTCCCCACTTTTCACCTCCATGTTTACTGATGTCGAA
AATATCCTTTGTGCAAATCATCTACATAAGACCTGTATACGGGTTGTAGG
CTTGAACCGGCATACCTGAACCATAAGGGTGGACATTGGCTGCATATGGG
TTTGCAAAAGGATTTGAAGTCTGTTGTGGGGCCATCATCATCATCTGCTG
CTGTTGTTGCTGCTGCAACATAAAAGCATGCTGCTGATTTGCCATGGCTG
CCATCTGCACTGAATGTGGAGCAGAAACCATGCCTGAGGCATAAAAGGGA
TCATGTCCATTTGGTTGCATCGTTGGACCAGCGATTGGTTGTGGCCCCCA
AGTACTGTAGCTCGCATTCTGGCTGTTTCTTCTTAATGCATCATCGTACA
GGCTGTCCAATGTAAGCTTGTCCAGCCCTCCCGCCAATTTGCTGGCAGCA
GTGGCATTTTCATTTGAGCTTGGAGCAGTAACAAGTGCCAATTCCCAGCC
TGCAGTTCCCTTTCCTTGAGTTGGAGCAACGGAAGTCGGTTGCTCGACTG
GA
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