CX675439
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: PTBP3_ARATH (Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 2.018e-75 Identity = 133/153 (86.93%), Postives = 147/153 (96.08%), Query Frame = 2 Query: 2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 460 NKPDHALVQMGDGFQAELAVHFLKGA+LFGKRLEVNFSKHPNIT G D+H+Y+NSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE+++H++EHG+ VNTK+FEMNGKKQALV FE EE+A EALVCKHA+SLGGSIIRISFSQLQ+I Sbjct: 280 NKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALVCKHATSLGGSIIRISFSQLQTI 432
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: PTBP1_HUMAN (Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.571e-19 Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 2 Query: 2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448 NK ++ALVQM DG QA+LA+ L G L GK + + SKH N+ +G + T +Y NS L+RF + +KN++ P+ +HLS +P V+EE++ +G V F +K AL+ + E+A +AL+ H LG +R+SFS+ Sbjct: 372 NKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 528
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: PTBP1_PIG (Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.679e-19 Identity = 56/157 (35.67%), Postives = 88/157 (56.05%), Query Frame = 2 Query: 2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448 NK ++ALVQM DG QA+LA+ L G L GK + + SKH N+ +G + T +Y NS L+RF + +KN++ P+ +HLS +P ++EE++ +G V F +K AL+ + E+A +AL+ H LG +R+SFS+ Sbjct: 398 NKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 554
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: PTBP1_RAT (Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus GN=Ptbp1 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.268e-18 Identity = 54/157 (34.39%), Postives = 89/157 (56.69%), Query Frame = 2 Query: 2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448 NK ++ALV+M DG QA+LA+ L G L GK + + SKH ++ +G + T +Y +S L+RF + +KN++ P+ +HLS +P V+E+++ S +G V F +K AL+ + E+A +AL+ H LG +R+SFS+ Sbjct: 396 NKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 552
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: PTBP1_BOVIN (Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.268e-18 Identity = 54/157 (34.39%), Postives = 88/157 (56.05%), Query Frame = 2 Query: 2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448 NK ++ALVQM DG QA+LA+ L G L GK + + SKH ++ +G + T +Y NS L+RF + +KN++ P+ +HLS +P ++E+++ +G V F +K AL+ + E+A +AL+ H LG +R+SFS+ Sbjct: 372 NKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQSVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 528
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: ROD1_MOUSE (Regulator of differentiation 1 OS=Mus musculus GN=Rod1 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.052e-18 Identity = 55/157 (35.03%), Postives = 87/157 (55.41%), Query Frame = 2 Query: 2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448 NK ++ALVQM D QA+LA++ L G L+GK L SKH + +G + T ++ NS L+RF + +KN++ P+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H LG +R+SFS+ Sbjct: 364 NKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 520
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: PTBP2_RAT (Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus GN=Ptbp2 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18 Identity = 56/157 (35.67%), Postives = 87/157 (55.41%), Query Frame = 2 Query: 2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448 NK D AL+QM DG Q++LA++ L G ++GK + V SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++ + G V F K AL+ T E+A +AL+ H +LG +R+SFS+ Sbjct: 373 NKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKF-FQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: PTBP2_MOUSE (Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2 PE=1 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18 Identity = 56/157 (35.67%), Postives = 87/157 (55.41%), Query Frame = 2 Query: 2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448 NK D AL+QM DG Q++LA++ L G ++GK + V SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++ + G V F K AL+ T E+A +AL+ H +LG +R+SFS+ Sbjct: 373 NKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKF-FQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: PTBP2_HUMAN (Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18 Identity = 56/157 (35.67%), Postives = 87/157 (55.41%), Query Frame = 2 Query: 2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448 NK D AL+QM DG Q++LA++ L G ++GK + V SKH + +G D T ++ NS L+RF + +KN++ P+ +HLS +P V EE++ + G V F K AL+ T E+A +AL+ H +LG +R+SFS+ Sbjct: 373 NKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKF-FQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: ROD1_RAT (Regulator of differentiation 1 OS=Rattus norvegicus GN=Rod1 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.618e-18 Identity = 54/157 (34.39%), Postives = 87/157 (55.41%), Query Frame = 2 Query: 2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448 NK ++ALVQM D QA++A++ L G L+GK L SKH + +G + T ++ NS L+RF + +KN++ P+ +HLS +P VT +++ + E G V F +K AL+ + E+A +AL+ H LG +R+SFS+ Sbjct: 364 NKKENALVQMADASQAQIAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 520 The following BLAST results are available for this feature:
BLAST of CX675439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX675439 ID=CX675439; Name=CX675439; organism=Citrus sinensis; type=EST; length=675bpback to top |