CX675439

Overview
NameCX675439
Unique NameCX675439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9863 contig Csv1_Contig9863:236..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: PTBP3_ARATH (Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.018e-75
Identity = 133/153 (86.93%), Postives = 147/153 (96.08%), Query Frame = 2
Query:    2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 460
            NKPDHALVQMGDGFQAELAVHFLKGA+LFGKRLEVNFSKHPNIT G D+H+Y+NSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEE+++H++EHG+ VNTK+FEMNGKKQALV FE EE+A EALVCKHA+SLGGSIIRISFSQLQ+I
Sbjct:  280 NKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALVCKHATSLGGSIIRISFSQLQTI 432          
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: PTBP1_HUMAN (Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.571e-19
Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 2
Query:    2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448
            NK ++ALVQM DG QA+LA+  L G  L GK + +  SKH N+    +G +    T +Y NS L+RF +  +KN++    P+  +HLS +P  V+EE++      +G  V    F    +K AL+   + E+A +AL+  H   LG    +R+SFS+
Sbjct:  372 NKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 528          
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: PTBP1_PIG (Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.679e-19
Identity = 56/157 (35.67%), Postives = 88/157 (56.05%), Query Frame = 2
Query:    2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448
            NK ++ALVQM DG QA+LA+  L G  L GK + +  SKH N+    +G +    T +Y NS L+RF +  +KN++    P+  +HLS +P  ++EE++      +G  V    F    +K AL+   + E+A +AL+  H   LG    +R+SFS+
Sbjct:  398 NKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 554          
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: PTBP1_RAT (Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus GN=Ptbp1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.268e-18
Identity = 54/157 (34.39%), Postives = 89/157 (56.69%), Query Frame = 2
Query:    2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448
            NK ++ALV+M DG QA+LA+  L G  L GK + +  SKH ++    +G +    T +Y +S L+RF +  +KN++    P+  +HLS +P  V+E+++ S    +G  V    F    +K AL+   + E+A +AL+  H   LG    +R+SFS+
Sbjct:  396 NKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 552          
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: PTBP1_BOVIN (Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.268e-18
Identity = 54/157 (34.39%), Postives = 88/157 (56.05%), Query Frame = 2
Query:    2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448
            NK ++ALVQM DG QA+LA+  L G  L GK + +  SKH ++    +G +    T +Y NS L+RF +  +KN++    P+  +HLS +P  ++E+++      +G  V    F    +K AL+   + E+A +AL+  H   LG    +R+SFS+
Sbjct:  372 NKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQSVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 528          
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: ROD1_MOUSE (Regulator of differentiation 1 OS=Mus musculus GN=Rod1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.052e-18
Identity = 55/157 (35.03%), Postives = 87/157 (55.41%), Query Frame = 2
Query:    2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448
            NK ++ALVQM D  QA+LA++ L G  L+GK L    SKH  +    +G +    T ++ NS L+RF +  +KN++    P+  +HLS +P  VT +++ +   E G  V    F    +K AL+   + E+A +AL+  H   LG    +R+SFS+
Sbjct:  364 NKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 520          
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: PTBP2_RAT (Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus GN=Ptbp2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 56/157 (35.67%), Postives = 87/157 (55.41%), Query Frame = 2
Query:    2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448
            NK D AL+QM DG Q++LA++ L G  ++GK + V  SKH  +    +G D    T ++ NS L+RF +  +KN++    P+  +HLS +P  V EE++ +     G  V    F     K AL+   T E+A +AL+  H  +LG    +R+SFS+
Sbjct:  373 NKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKF-FQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528          
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: PTBP2_MOUSE (Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 56/157 (35.67%), Postives = 87/157 (55.41%), Query Frame = 2
Query:    2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448
            NK D AL+QM DG Q++LA++ L G  ++GK + V  SKH  +    +G D    T ++ NS L+RF +  +KN++    P+  +HLS +P  V EE++ +     G  V    F     K AL+   T E+A +AL+  H  +LG    +R+SFS+
Sbjct:  373 NKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKF-FQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528          
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: PTBP2_HUMAN (Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 56/157 (35.67%), Postives = 87/157 (55.41%), Query Frame = 2
Query:    2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNI---TQGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448
            NK D AL+QM DG Q++LA++ L G  ++GK + V  SKH  +    +G D    T ++ NS L+RF +  +KN++    P+  +HLS +P  V EE++ +     G  V    F     K AL+   T E+A +AL+  H  +LG    +R+SFS+
Sbjct:  373 NKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKF-FQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528          
BLAST of CX675439 vs. ExPASy Swiss-Prot
Match: ROD1_RAT (Regulator of differentiation 1 OS=Rattus norvegicus GN=Rod1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.618e-18
Identity = 54/157 (34.39%), Postives = 87/157 (55.41%), Query Frame = 2
Query:    2 NKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKHPNIT---QGAD----THEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVSHLEEHGSXVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLG-GSIIRISFSQ 448
            NK ++ALVQM D  QA++A++ L G  L+GK L    SKH  +    +G +    T ++ NS L+RF +  +KN++    P+  +HLS +P  VT +++ +   E G  V    F    +K AL+   + E+A +AL+  H   LG    +R+SFS+
Sbjct:  364 NKKENALVQMADASQAQIAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 520          
The following BLAST results are available for this feature:
BLAST of CX675439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PTBP3_ARATH2.018e-7586.93Polypyrimidine tract-binding protein homolog 3 OS=... [more]
PTBP1_HUMAN1.571e-1936.31Polypyrimidine tract-binding protein 1 OS=Homo sap... [more]
PTBP1_PIG2.679e-1935.67Polypyrimidine tract-binding protein 1 OS=Sus scro... [more]
PTBP1_RAT2.268e-1834.39Polypyrimidine tract-binding protein 1 OS=Rattus n... [more]
PTBP1_BOVIN2.268e-1834.39Polypyrimidine tract-binding protein 1 OS=Bos taur... [more]
ROD1_MOUSE5.052e-1835.03Regulator of differentiation 1 OS=Mus musculus GN=... [more]
PTBP2_RAT6.599e-1835.67Polypyrimidine tract-binding protein 2 OS=Rattus n... [more]
PTBP2_MOUSE6.599e-1835.67Polypyrimidine tract-binding protein 2 OS=Mus musc... [more]
PTBP2_HUMAN6.599e-1835.67Polypyrimidine tract-binding protein 2 OS=Homo sap... [more]
ROD1_RAT8.618e-1834.39Regulator of differentiation 1 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62C05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62C05-F10-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675439 ID=CX675439; Name=CX675439; organism=Citrus sinensis; type=EST; length=675bp
CAATAAACCAGATCATGCTCTTGTTCAGATGGGCGATGGCTTCCAGGCTG
AATTGGCGGTGCACTTTCTGAAGGGAGCCTTACTATTTGGGAAGCGATTA
GAGGTCAACTTCTCTAAGCATCCCAATATAACTCAAGGTGCTGACACACA
TGAATACATGAACTCGAACCTTAACCGCTTCAACCGTAATGCCGCAAAGA
ACTATCGTTACTGCTGCTCCCCAACAAAGATGATCCACCTTTCCACTTTA
CCACAAGATGTTACTGAAGAGGAAATTGTGAGCCACCTGGAGGAGCATGG
CTCCNTTGTGAATACCAAGCTCTTTGAGATGAATGGGAAGAAGCAGGCCT
TGGTCCTCTTTGAAACCGAGGAGCAGGCCACTGAAGCCCTTGTGTGCAAG
CATGCTAGCTCACTTGGCGGGTCTATAATCCGAATCTCCTTCTCCCAGTT
ACAGTCAATAAGGGAAAACTCGCAGTAAAACATTGACTATTTGCTAAGCC
ACGTGAGTTAAGGATTCATATAAACAAGGACATTTTGATGTAGCTGAACA
GTCTCCTTCGATGTTATCTCTTGTAACAGTAGTTTTGCTTATTTTGCGTT
GGTGGATGCGTTTTTATTTTCTTTTTATCTTTATTTCATATCANTTCTAG
TGCATGTACTGGCTACCCTTTTTTT
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