CX675438

Overview
NameCX675438
Unique NameCX675438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675438_ssr184 microsatellite CX675438_ssr184:184..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9863 contig Csv1_Contig9863:455..1160. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX675438 vs. ExPASy Swiss-Prot
Match: PTBP3_ARATH (Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.361e-32
Identity = 66/80 (82.50%), Postives = 77/80 (96.25%), Query Frame = -2 
Query:  466 PTKMIHLSTLPQDVTEEEIVSHLEEHGSIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 705
            PTKMIHLSTLPQDVTEEE+++H++EHG++VNTK+FEMNGKKQALV FE EE+A EALVCKHA+SLGGSIIRISFSQLQ+I
Sbjct:  353 PTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALVCKHATSLGGSIIRISFSQLQTI 432
The following BLAST results are available for this feature:
BLAST of CX675438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PTBP3_ARATH1.361e-3282.50Polypyrimidine tract-binding protein homolog 3 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_62C05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62C05-F10-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675438 ID=CX675438; Name=CX675438; organism=Citrus sinensis; type=EST; length=706bp
TTTTTTTTTTTTTTTTTGGAAGCAAAATTCTTTTTAGATCATAAATCAAC
TGGGACAAATGAGGTTTGGTTTATGAATTCAGAATACAACAGTACCAACC
CCATCGGCATGAAATACAAAGATATTTACAACTAAAAATACATGAAACTT
TGAAAGCCCTAGCTCAGGAAAAGGTAGTACAATTCTCTCTCTCTTTCTAC
TCTTCAAATTGACCAAATCTGCAAAAATCTACCTCAAATTAAACAAACCT
AAAAAAAGGGTAGCCAGTACATGCACTAGAAATGATATGAAATAAAGATA
AAAAGAAAATAAAAACGCATCCCCCAACGCAAAATAAGCAAAACTACTGT
TACAAGAGATAACATCGAAGGAGACTGTTCAGCTACATCAAAATGTCCTT
GTTTATATGAATCCTTAACTCACGTGGCTTAGCAAATAGTCAATGTTTTA
CTGCGAGTTTTCCCTTATTGACTGTAACTGGGAGAAGGAGATTCGGATTA
TAGACCCGCCCAGTGAGCTAGCATGCTTGCACACAAGGGCTTCAGTGGCC
TGCTCCTCGGTTTCAAAGAGGACCAAGGCCTGCTTCTTCCCATTCATCTC
AAAGAGCTTGGTATTCACAATGGAGCCATGCTCCTCCAGGTGGCTCACAA
TTTCCTCTTCAGTAACATCTTGTGGTAAAGTGGAAAGGTGGATCATCTTT
GTTGGG
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