CX675435

Overview
NameCX675435
Unique NameCX675435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675435 vs. ExPASy Swiss-Prot
Match: TMEDA_RABIT (Transmembrane emp24 domain-containing protein 10 OS=Oryctolagus cuniculus GN=TMED10 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.883e-15
Identity = 50/191 (26.18%), Postives = 94/191 (49.21%), Query Frame = -1
Query:  239 SMRFDLTSGHTKCVSEDINHNGMTVGKYGVVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPDHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 811
            ++ F L     KC+ E+I+ + +  G Y + + + G     TH   +K+T   G+  +  +    G FAFT  +   +  CF S          V  + K GV +K++ ++AK  ++  +E+EL++L D   SI             M++ N++TN+R+      S+   + +A  Q+++L+ FF+ KKL+
Sbjct:   31 AISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGLRTH---LKITDSAGHILYSKEDASKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of CX675435 vs. ExPASy Swiss-Prot
Match: TMEDA_MESAU (Transmembrane protein Tmp21 OS=Mesocricetus auratus GN=TMED10 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.883e-15
Identity = 50/191 (26.18%), Postives = 95/191 (49.74%), Query Frame = -1
Query:  239 SMRFDLTSGHTKCVSEDINHNGMTVGKYGVVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPDHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 811
            ++ F L     KC+ E+I+ + +  G Y + + + G     TH   +K+T   G+  +  +    G FAFT  +   +  CF S          V  + K GV +K++ ++AK  ++  +E+EL++L D   SI             M++ N++TN+R+      S++  + +A  Q+++L+ FF+ KKL+
Sbjct:   31 AISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGLRTH---LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMLCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of CX675435 vs. ExPASy Swiss-Prot
Match: TMEDA_BOVIN (Transmembrane emp24 domain-containing protein 10 OS=Bos taurus GN=TMED10 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.291e-14
Identity = 50/191 (26.18%), Postives = 94/191 (49.21%), Query Frame = -1
Query:  239 SMRFDLTSGHTKCVSEDINHNGMTVGKYGVVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPDHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 811
            ++ F L     KC+ E+I+ + +  G Y + + + G     TH   +K+T   G+  +  +    G FAFT  +   +  CF S          V  + K GV +K++ ++AK  ++  +E+EL++L D   SI             M++ N++TN+R+      S+   + +A  Q+++L+ FF+ KKL+
Sbjct:   31 AISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGLRTH---LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of CX675435 vs. ExPASy Swiss-Prot
Match: TMEDA_RAT (Transmembrane emp24 domain-containing protein 10 OS=Rattus norvegicus GN=Tmed10 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 50/188 (26.60%), Postives = 92/188 (48.94%), Query Frame = -1
Query:  239 FDLTSGHTKCVSEDINHNGMTVGKYGVVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPDHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 802
            F L     KC+ E+I+ + +  G Y + + + G     TH   +K+T   G+  +  +    G FAFT  +   +  CF S          V  + K GV +K++ ++AK  ++  +E+EL++L D   SI             M++ N++TN+R+      S+   + +A  Q+++L+ FF+ KKL+
Sbjct:   34 FHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGLRTH---LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of CX675435 vs. ExPASy Swiss-Prot
Match: TMEDA_MOUSE (Transmembrane emp24 domain-containing protein 10 OS=Mus musculus GN=Tmed10 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 50/188 (26.60%), Postives = 92/188 (48.94%), Query Frame = -1
Query:  239 FDLTSGHTKCVSEDINHNGMTVGKYGVVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPDHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 802
            F L     KC+ E+I+ + +  G Y + + + G     TH   +K+T   G+  +  +    G FAFT  +   +  CF S          V  + K GV +K++ ++AK  ++  +E+EL++L D   SI             M++ N++TN+R+      S+   + +A  Q+++L+ FF+ KKL+
Sbjct:   34 FHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGLRTH---LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of CX675435 vs. ExPASy Swiss-Prot
Match: TMEDA_PONAB (Transmembrane emp24 domain-containing protein 10 OS=Pongo abelii GN=TMED10 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.406e-14
Identity = 49/191 (25.65%), Postives = 94/191 (49.21%), Query Frame = -1
Query:  239 SMRFDLTSGHTKCVSEDINHNGMTVGKYGVVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPDHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 811
            ++ F L     KC+ E+I+ + +  G Y + + + G     +H   +K+T   G+  +  +    G FAFT  +   +  CF S          V  + K GV +K++ ++AK  ++  +E+EL++L D   SI             M++ N++TN+R+      S+   + +A  Q+++L+ FF+ KKL+
Sbjct:   31 AISFHLPINSRKCLREEIHKDLLVTGAYEISDQSGGAGGLRSH---LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMEKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of CX675435 vs. ExPASy Swiss-Prot
Match: TMEDA_HUMAN (Transmembrane emp24 domain-containing protein 10 OS=Homo sapiens GN=TMED10 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.406e-14
Identity = 49/191 (25.65%), Postives = 94/191 (49.21%), Query Frame = -1
Query:  239 SMRFDLTSGHTKCVSEDINHNGMTVGKYGVVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPDHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 811
            ++ F L     KC+ E+I+ + +  G Y + + + G     +H   +K+T   G+  +  +    G FAFT  +   +  CF S          V  + K GV +K++ ++AK  ++  +E+EL++L D   SI             M++ N++TN+R+      S+   + +A  Q+++L+ FF+ KKL+
Sbjct:   31 AISFHLPINSRKCLREEIHKDLLVTGAYEISDQSGGAGGLRSH---LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of CX675435 vs. ExPASy Swiss-Prot
Match: TMEDA_TAKRU (Transmembrane emp24 domain-containing protein 10 OS=Takifugu rubripes GN=tmed10 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.208e-12
Identity = 50/197 (25.38%), Postives = 93/197 (47.21%), Query Frame = -1
Query:  239 SMRFDLTSGHTKCVSEDINHNGMTVGKYGVVNPNEGYPLPDTHKLTV------KVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPDHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 811
            S+ F L     KC+ E+I+ + +  G+Y +   +E      T    V      K+T    ++ +  +    G FAFT  +   +  CF S          V  + K GV +K++ ++AK  ++  +E+EL++L D   SI             M++ N++TN+R+      S+   + +A  Q+++L+ FF+ KKL+
Sbjct:   19 SISFFLPVNTRKCLREEIHKDVLVTGEYEI---SEQVVTVHTSSTVVGDGSIFKITDSSSHTLYSKEDATKGKFAFTTEDYDMFEVCFESKCTGRVPDQLVNLDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 212          
BLAST of CX675435 vs. ExPASy Swiss-Prot
Match: ERV25_CANGA (Endoplasmic reticulum vesicle protein 25 OS=Candida glabrata GN=ERV25 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.658e-11
Identity = 50/206 (24.27%), Postives = 96/206 (46.60%), Query Frame = -1
Query:  239 LFSKFGESMRFDL---TSGHTKCVSEDINHNGMTVGKYGVVNPNEGYPLPDTHKLTVKVTSPYGNSYHQ-GDHVESGNFAFTAAEAGDYTACFW----SPDHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 832
            L + F  ++RFDL   +     C+ + ++      G+  V+N +    L D + L + V    GN Y +  + V     AFTA     +  CF     S   N  A   +E + ++G  ++DW K++   ++  +ELEL+K+ +    I             ++  N++TN R+ +   + ++V  S+ A Q+ +LK +F+ K ++
Sbjct:    8 LLAPFISALRFDLKAESKPEQMCIRDFVSE-----GELVVINIDTDGSLNDGNVLNLYVHDSNGNEYRRLKNFVGEQRIAFTAPATTSFDVCFENTLDSNRGNRNAKRAIELDIESGSQARDWNKISATEKLRPIELELRKIEELTDEIVDELNYLKNREERLRNTNESTNERVRNFSVLVIIVLTSLGAWQVNYLKNYFKSKHII 208          
The following BLAST results are available for this feature:
BLAST of CX675435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TMEDA_RABIT9.883e-1526.18Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_MESAU9.883e-1526.18Transmembrane protein Tmp21 OS=Mesocricetus auratu... [more]
TMEDA_BOVIN1.291e-1426.18Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_RAT2.202e-1426.60Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_MOUSE2.202e-1426.60Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_PONAB6.406e-1425.65Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_HUMAN6.406e-1425.65Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_TAKRU1.208e-1225.38Transmembrane emp24 domain-containing protein 10 O... [more]
ERV25_CANGA8.658e-1124.27Endoplasmic reticulum vesicle protein 25 OS=Candid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_62C03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62C03-F6-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675435 ID=CX675435; Name=CX675435; organism=Citrus sinensis; type=EST; length=832bp
TTTTGTCCACGGCATTGCAGCTGCCTTTTTGGTAACATAGTTCACGGGAA
CCAATTTGAGACTGTCCAATGACATTGCAGTTGCCTTTTGGTAAAATAGT
TCCCGGCAACAAAACAAGAGAGTATATATTATCAATTGCAAATGCAGTAA
GCATCCAATTTTCTAGTATCAGCATTTCAACACAAGTATTAACCACATCA
ACTGATCAAATGTGGTGAAAACTTTGGTAGCAACTCTAGAGGAGCTTCTT
CCTCTCAAAGAAGGTCTTCAGATGCCATATTTGCAATGCAGCAACGGATA
GGCAAACAACAAGCGATATGAATCCAAGACTCGCCATTCTGGAATTTGTT
GTTTTATTAAGCTCTTGCATTTCTTCCTCCCTCTCACGAAGATAAAACAT
TTCTTCATGAATGGATGAGACGGTATCAAATAACTTCTTGAGCTCCAGTT
CCATCATGTCAACCTGCCCTTTCTTAGCAACCTTAGTCCAATCCTTGGAA
ACTACACCGGTCTTCCACTCAAATTCAACTGTCACAGTTGCTGGTGGGTT
GTGGTCAGGTGACCAAAAGCAAGCAGTATAGTCACCAGCTTCAGCTGCAG
TAAATGCAAAATTACCCGATTCCACGTGATCCCCCTGGTGGTAACTGTTC
CCATAAGGCGAAGTCACCTTAACAGTGAGCTTGTGCGTATCAGGCAAAGG
GTAGCCTTCATTTGGATTAACAACACCGTACTTTCCCACAGTCATTCCAT
TGTGATTTATATCCTCTGATACGCATTTCGTGTGTCCTGATGTCAGATCG
AACCTCATTGATTCTCCAAATTTTGAAAATAA
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