CK938100

Overview
NameCK938100
Unique NameCK938100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938100 vs. ExPASy Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.652e-43
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 1
Query:    4 DGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 261
            DGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP++TRLN
Sbjct:   31 DGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLN 116          
BLAST of CK938100 vs. ExPASy Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.482e-41
Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 1
Query:    4 DGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 261
            DGQEYAQV RMLGNGRCEA+C+DGTKRLCHIRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP++ RLN
Sbjct:   31 DGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLN 116          
BLAST of CK938100 vs. ExPASy Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 2.938e-34
Identity = 68/86 (79.07%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    4 DGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 261
            DGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   31 DGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116          
BLAST of CK938100 vs. ExPASy Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ay PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 2.938e-34
Identity = 68/86 (79.07%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    4 DGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 261
            DGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   31 DGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116          
BLAST of CK938100 vs. ExPASy Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.938e-34
Identity = 68/86 (79.07%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    4 DGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 261
            DGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   31 DGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116          
BLAST of CK938100 vs. ExPASy Swiss-Prot
Match: IF1AY_PANTR (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes GN=EIF1AY PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 6.546e-34
Identity = 67/86 (77.91%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    4 DGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 261
            DGQEYAQV++MLGNGR EA+C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   31 DGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116          
BLAST of CK938100 vs. ExPASy Swiss-Prot
Match: IF1AY_HUMAN (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Homo sapiens GN=EIF1AY PE=1 SV=4)

HSP 1 Score: 143.665 bits (361), Expect = 6.546e-34
Identity = 67/86 (77.91%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    4 DGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 261
            DGQEYAQV++MLGNGR EA+C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   31 DGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116          
BLAST of CK938100 vs. ExPASy Swiss-Prot
Match: IF1A_RAT (Eukaryotic translation initiation factor 1A OS=Rattus norvegicus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 8.549e-34
Identity = 66/86 (76.74%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    4 DGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 261
            DGQEYAQV++MLGNGR EAMC DG +RLCHIRGK+ KKVWI   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   31 DGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116          
BLAST of CK938100 vs. ExPASy Swiss-Prot
Match: IF1A_MOUSE (Eukaryotic translation initiation factor 1A OS=Mus musculus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 8.549e-34
Identity = 66/86 (76.74%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    4 DGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 261
            DGQEYAQV++MLGNGR EAMC DG +RLCHIRGK+ KKVWI   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   31 DGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116          
BLAST of CK938100 vs. ExPASy Swiss-Prot
Match: IF1A_RABIT (Eukaryotic translation initiation factor 1A OS=Oryctolagus cuniculus GN=EIF1A PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.328e-31
Identity = 65/86 (75.58%), Postives = 72/86 (83.72%), Query Frame = 1
Query:    4 DGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 261
            DGQEYAQV++MLGNGR EAM  DG KRL HIRGK+ KKVWI   DIILVGLR+YQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   31 DGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKLRKKVWINTSDIILVGLREYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116          
The following BLAST results are available for this feature:
BLAST of CK938100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
IF1A_ONOVI2.652e-4396.51Eukaryotic translation initiation factor 1A OS=Ono... [more]
IF1A_WHEAT2.482e-4190.70Eukaryotic translation initiation factor 1A OS=Tri... [more]
IF1AX_PONAB2.938e-3479.07Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AX_MOUSE2.938e-3479.07Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AX_HUMAN2.938e-3479.07Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AY_PANTR6.546e-3477.91Eukaryotic translation initiation factor 1A, Y-chr... [more]
IF1AY_HUMAN6.546e-3477.91Eukaryotic translation initiation factor 1A, Y-chr... [more]
IF1A_RAT8.549e-3476.74Eukaryotic translation initiation factor 1A OS=Rat... [more]
IF1A_MOUSE8.549e-3476.74Eukaryotic translation initiation factor 1A OS=Mus... [more]
IF1A_RABIT2.328e-3175.58Eukaryotic translation initiation factor 1A OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004478_B02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0002_IVF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938100 ID=CK938100; Name=CK938100; organism=Citrus sinensis; type=EST; length=585bp
GGGGACGGACAGGAATATGCCCAAGTCCTTCGTATGCTCGGCAATGGTCG
GTGTGAAGCTATGTGCATCGATGGAACCAAGCGTCTTTGCCACATCCGTG
GGAAGATGCACAAAAAGGTTTGGATTGCAGCTGGTGATATAATACTTGTT
GGCCTACGTGATTATCAGGATGACAAGGCTGATGTCATCCTCAAGTATAT
GCCCGACGAGGCAAGGCTTCTGAAGGCTTATGGTGAACTTCCAGAGAGTA
CCCGTCTCAATGAGGGCATTGCTGGTGGTCTTGATGAAGAGGATGATGGC
GCTGATAATGATTACATCGAGTTTGAAGACGAAGATATTGATAAGATCTA
GGCTCCGAGAATCGACTCTGTCTGGGGTTTATGTTCAATATTTAGCAAAA
ATGGAGTATGCCAATGTATTGGTTACTTAAAAGCTGAAAATATGTGTTTG
CAGCTTATATATTTGGAATTTTTAATGGTGAGCCTGTCATATTTTGTGTA
ACGCCTATTACTTGCTTATTAATTTTGTTTAGTTCTGCACTTTTTTTGAA
GTGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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