CX675428

Overview
NameCX675428
Unique NameCX675428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675428_ssr440 microsatellite CX675428_ssr440:440..451. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6967 contig Csv1_Contig6967:78..642. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675428 vs. ExPASy Swiss-Prot
Match: FKB12_ARATH (Peptidyl-prolyl isomerase FKBP12 OS=Arabidopsis thaliana GN=FKBP12 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 2.018e-53
Identity = 92/112 (82.14%), Postives = 104/112 (92.86%), Query Frame = 3
Query:   33 MGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 368
            MG+EKQ++ PGNGPKP  GQ VTVHCTG+GK+GDLSQKFWSTKD GQ+PF+FQIGKG+VIKGWDEGV+GMQ+GEVARLRCS DYAYGAGGFP WGIQPNSVLDFEI+VL V+
Sbjct:    1 MGVEKQVIRPGNGPKPAPGQTVTVHCTGFGKDGDLSQKFWSTKDEGQKPFSFQIGKGAVIKGWDEGVIGMQIGEVARLRCSSDYAYGAGGFPAWGIQPNSVLDFEIEVLSVQ 112          
BLAST of CX675428 vs. ExPASy Swiss-Prot
Match: FKB12_VICFA (Peptidyl-prolyl isomerase FKBP12 OS=Vicia faba GN=FKBP12 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 5.871e-53
Identity = 92/112 (82.14%), Postives = 102/112 (91.07%), Query Frame = 3
Query:   33 MGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 368
            MG+EKQI+  G GP P  GQ VTVHCTGYGKNGDLSQKFWSTKDPGQ PFTF+IG+GSVIKGWDEGV+GMQ+GEVARLRCSPDYAYGAGGFP WGIQPNSVL+FEI+VL+ +
Sbjct:    1 MGVEKQIIRAGTGPNPSRGQNVTVHCTGYGKNGDLSQKFWSTKDPGQNPFTFKIGQGSVIKGWDEGVLGMQLGEVARLRCSPDYAYGAGGFPAWGIQPNSVLEFEIEVLRAQ 112          
BLAST of CX675428 vs. ExPASy Swiss-Prot
Match: FKB12_DROME (12 kDa FK506-binding protein OS=Drosophila melanogaster GN=FK506-bp2 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.559e-21
Identity = 58/113 (51.33%), Postives = 76/113 (67.26%), Query Frame = 3
Query:   33 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 368
            MG++   + PG+G   P  GQKVTVH TG   +G    KF S++D  + PF F IGKG VI+GWDEGV  + VG+ A+L CSPDYAYG+ G P   I PNS L F++++L+VE
Sbjct:    1 MGVQVVPIAPGDGSTYPKNGQKVTVHYTGTLDDGT---KFDSSRDRNK-PFKFTIGKGEVIRGWDEGVAQLSVGQRAKLICSPDYAYGSRGHP-GVIPPNSTLTFDVELLKVE 108          
BLAST of CX675428 vs. ExPASy Swiss-Prot
Match: FKBP_ASPOR (FK506-binding protein 1 OS=Aspergillus oryzae GN=fpr1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.660e-21
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = 3
Query:   33 MGIEKQILTPGNGPKPVAGQKVTVHCTGY------GKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYG---AGGFPQWGIQPNSVLDFEIQVLQV 365
            MG+E++I+T G+GP P +G KV++H TG+         G   ++F S++ PG+ P    IG+G VIKGWDEGVM M +GE + L  +PDY YG   AG  P      NS L FE+++L++
Sbjct:    1 MGVERKIITRGSGPSPASGDKVSIHYTGWIYDPKKANKGFQGKQFDSSRSPGRGPLVVNIGQGKVIKGWDEGVMQMSLGEKSTLTITPDYGYGDKAAGKIP-----ANSTLIFEVELLKI 115          
BLAST of CX675428 vs. ExPASy Swiss-Prot
Match: FKBP_GIBZE (FK506-binding protein 1 OS=Gibberella zeae GN=FPR1 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.537e-21
Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = 3
Query:   33 MGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 365
            MG+EK I+T G+GP P  GQKVT+  TG+ +  D ++        G+  F   IG G VIKGWDEGV  M++GE A L  SPDY YG  GFP   I PNS L F++++ ++
Sbjct:    1 MGVEKTIITQGSGPSPQVGQKVTMEYTGWLQKEDGTKGDQFDTSVGRGDFVVNIGVGQVIKGWDEGVTQMKLGEKATLHISPDYGYGPRGFP-GAIPPNSTLIFDVELKKI 110          
BLAST of CX675428 vs. ExPASy Swiss-Prot
Match: FKB1A_EMENI (FK506-binding protein 1A OS=Emericella nidulans GN=fprA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.926e-21
Identity = 59/115 (51.30%), Postives = 78/115 (67.83%), Query Frame = 3
Query:   33 MGIEKQILTPGNG---PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKD-PGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 365
            MG+E Q ++PG+G   PKP  G  V++H TG   +G    KF S++D PG   F  QIG G VIKGWDEGV+ + VGE A+L C+PDYAYGA GFP   I PN+ L FE+++L++
Sbjct:    1 MGVEVQRISPGDGKNFPKP--GDTVSIHYTGTLADGS---KFDSSRDRPGT--FVTQIGVGRVIKGWDEGVLQLSVGEKAKLICTPDYAYGARGFPP-VIPPNATLTFEVELLKI 107          
BLAST of CX675428 vs. ExPASy Swiss-Prot
Match: FKBP_SCHPO (FK506-binding protein OS=Schizosaccharomyces pombe GN=SPBC839.17c PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.552e-20
Identity = 55/114 (48.25%), Postives = 74/114 (64.91%), Query Frame = 3
Query:   33 MGIEKQILTPGNG---PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 365
            MG+EKQ+++ GNG   PKP  G ++T+H TG   NG   +KF S+ D G  PF   IG G +I+GWDEGV  M +GE A+L  +PDY YG  GFP   I PNS L F++++L +
Sbjct:    1 MGVEKQVISSGNGQDFPKP--GDRITMHYTGTLTNG---KKFDSSVDRGS-PFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRGFPGL-IPPNSTLLFDVELLAI 107          
BLAST of CX675428 vs. ExPASy Swiss-Prot
Match: FKBP1_RHIOR (FK506-binding protein 1 OS=Rhizopus oryzae GN=FKBP1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.252e-19
Identity = 49/112 (43.75%), Postives = 71/112 (63.39%), Query Frame = 3
Query:   33 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 365
            MG+  + + PG+G   P  G  VT+H TG  +NG +    + +     +PF  QIG G VIKGWDEGV+ + +G+ A L C+PDYAYG  GFP   I PN+ L+FE+++L++
Sbjct:    1 MGVTVETIQPGDGKNFPKKGDTVTMHYTGTLQNGSV----FDSSVRRNEPFVTQIGVGRVIKGWDEGVLQLSLGQKANLICTPDYAYGPRGFPP-VIPPNATLNFEVELLKI 107          
BLAST of CX675428 vs. ExPASy Swiss-Prot
Match: FKB1A_XENLA (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Xenopus laevis GN=fkbp1a PE=3 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 4.247e-19
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 3
Query:   33 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 368
            MG++ + +T G+G   P  GQ V VH  G  +NG   +KF S++D  + PF F IG+  VI+GW+EGV  M VG+ ARL CSPD+AYGA G P   I PN+ L F++++L++E
Sbjct:    1 MGVQVETITEGDGRTFPKKGQTVVVHYVGSLENG---KKFDSSRDRNK-PFKFIIGRCEVIRGWEEGVAQMSVGQRARLTCSPDFAYGATGHPGI-IPPNATLTFDVELLRLE 108          
BLAST of CX675428 vs. ExPASy Swiss-Prot
Match: FKBP_CRYNV (FK506-binding protein 1 OS=Cryptococcus neoformans var. grubii GN=FRR1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.546e-19
Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 3
Query:   33 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 365
            MG+  + ++ G+G   P  G  VT+H  G   +G    KF S++D G  PF  +IG+G VI+GWDEGV  + VG+ A L C+PDYAYGA GFP   I PNS L FE+++L+V
Sbjct:    1 MGVTVENISAGDGKTFPQPGDNVTIHYVGTLLDGS---KFDSSRDRGT-PFVCRIGQGQVIRGWDEGVPQLSVGQKANLICTPDYAYGARGFPP-VIPPNSTLKFEVELLKV 107          
The following BLAST results are available for this feature:
BLAST of CX675428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
FKB12_ARATH2.018e-5382.14Peptidyl-prolyl isomerase FKBP12 OS=Arabidopsis th... [more]
FKB12_VICFA5.871e-5382.14Peptidyl-prolyl isomerase FKBP12 OS=Vicia faba GN=... [more]
FKB12_DROME1.559e-2151.3312 kDa FK506-binding protein OS=Drosophila melanog... [more]
FKBP_ASPOR2.660e-2143.33FK506-binding protein 1 OS=Aspergillus oryzae GN=f... [more]
FKBP_GIBZE4.537e-2146.85FK506-binding protein 1 OS=Gibberella zeae GN=FPR1... [more]
FKB1A_EMENI5.926e-2151.30FK506-binding protein 1A OS=Emericella nidulans GN... [more]
FKBP_SCHPO6.552e-2048.25FK506-binding protein OS=Schizosaccharomyces pombe... [more]
FKBP1_RHIOR3.252e-1943.75FK506-binding protein 1 OS=Rhizopus oryzae GN=FKBP... [more]
FKB1A_XENLA4.247e-1946.90Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Xeno... [more]
FKBP_CRYNV5.546e-1947.32FK506-binding protein 1 OS=Cryptococcus neoformans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62B09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B09-D18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675428 ID=CX675428; Name=CX675428; organism=Citrus sinensis; type=EST; length=566bp
AGAAAGTCAAAAACCCTAAGACAGAGAAGGAGATGGGAATAGAGAAGCAA
ATTTTGACCCCAGGAAACGGTCCTAAGCCGGTTGCTGGTCAGAAGGTTAC
CGTCCACTGCACTGGCTACGGGAAAAATGGCGATCTGTCTCAGAAGTTCT
GGAGCACAAAGGACCCTGGGCAGCAGCCTTTTACATTCCAGATTGGCAAA
GGCTCTGTTATAAAAGGATGGGATGAAGGTGTGATGGGAATGCAGGTGGG
AGAAGTTGCTCGTCTGCGGTGCTCCCCAGATTACGCCTATGGTGCTGGTG
GATTTCCACAATGGGGGATTCAACCTAACTCAGTCCTGGATTTTGAGATA
CAAGTCCTGCAGGTAGAATAAGCACCTCATAAAGGCAGAAAACCATCTAG
AAAATTTTATGGTTTTAAATAAATTGTCTTACCATGGACATGTATGTATG
TTATCCTGAACTCCTGATAAATATCAGATGGCTATGATGGAACGATCTTT
TTTTTCGACGTTTTAATAACACTACATGTGCAACTTTTTAGCAACAAAGA
CTTCTTGTTAAAAAAA
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