CK938093

Overview
NameCK938093
Unique NameCK938093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938093 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.159e-49
Identity = 100/153 (65.36%), Postives = 119/153 (77.78%), Query Frame = 3
Query:  204 ASSSLFTPSTITVRKHQISPSTISFQGLRPLNTRAKTS-LPKLATSAKRNSFGGIKAELSTPLVIXXXXXXXXXXXRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 659
            ++S+L +P+T +      +P++ISF GLRPL     +S LPKL+T+ +++S   ++AELS  +VI           RFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP
Sbjct:    4 SASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 156          
BLAST of CK938093 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.883e-40
Identity = 90/131 (68.70%), Postives = 99/131 (75.57%), Query Frame = 3
Query:  273 SFQGLRPL--NTRAKTSLPKLATSAKRNSFGGIKAELSTPLVIXXXXXXXXXXXRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 659
            SF GLRPL  N  +  S   L+ S+ R S    +AELS  LVI           RFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP
Sbjct:   36 SFSGLRPLKLNISSNNSSSSLSMSSARRSMT-CRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDP 164          
BLAST of CK938093 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.376e-34
Identity = 80/135 (59.26%), Postives = 95/135 (70.37%), Query Frame = 3
Query:  255 ISPSTISFQGLRPLNTRAKTSLPKLATSAKRNSFGGIKAELSTPLVIXXXXXXXXXXXRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 659
            +SP  ++   L P + RA  S   ++  A+R+     +A L   +VI           RFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP
Sbjct:    9 LSPPAVAGLRLAP-SPRAAASFRGVSPPARRSV--AARAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDP 139          
BLAST of CK938093 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.960e-18
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  378 STPLVIXXXXXXXXXXXRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 656
            +T  +I           RFVF  FQR  V++ GLPEQNGV          + + S+LK+NDP GF +VDVLAWG++GH V ++ILAT++NGY+
Sbjct:   17 NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109          
The following BLAST results are available for this feature:
BLAST of CK938093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAG_ARATH1.159e-4965.36Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL4.883e-4068.70Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU1.376e-3459.26Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU8.960e-1846.24Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004478_B12 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0002_IVF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938093 ID=CK938093; Name=CK938093; organism=Citrus sinensis; type=EST; length=804bp
GGGGGTGTGATTTTTTCTTAACCAATACTTGTATGGATCACGAGAATACG
TGATCCATATCTGTGTTTCTATCGCCGCTAAGCCTGTTCTATTTCTTGCA
AAAATTTATCATAATCCAGGAACTCAAAAACTCCATCATCCATCAAGGCA
TCAACCAGAACACAAAAAAGAAGGAAAAAGAGGGGGAAAAAAGAAAAATG
GCAGCCTCATCCTCCTTGTTCACACCCTCCACCATCACCGTCCGAAAACA
CCAAATTTCACCCTCCACCATCTCATTCCAAGGCCTAAGACCCCTCAACA
CCAGGGCCAAAACCTCCCTCCCCAAGCTCGCCACCTCCGCCAAAAGAAAC
AGCTTCGGCGGCATTAAAGCTGAGCTGAGCACACCACTTGTCATCAGCCT
CAGCACTGGCCTCTCCTTGCTCTTGGGCAGGTTCGTCTTCTTCAACTTCC
AAAGAGAGAACGTGGCCAAACAAGGCTTGCCCGAGCAGAATGGAGTCACC
CACTTTGAAGCCGGTGATGTTCGTGCCAAGGAATATGTTAGCCTCCTCAA
ATCCAACGACCCAGTTGGCTTTAACATTGTTGATGTTCTTGCTTGGGGTT
CCATTGGCCATATTGTCGCTTACTACATCTTGGCCACCTCCAGCAACGGC
TATGATCCCAAGTTCTTTGGTTGATTTTGTTATTTGTACTGTCTCTCTTT
GTCTCTTTTAGTTTCTTAATTTCTCAAGTGTTGCGCTTTGTATAGTTAAA
TAAATTTCCTAGCATTTAATGGATGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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