CK938092 | Citrus Genome Database

Overview


Name	CK938092
Unique Name	CK938092
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	684

Libraries


Library Name	Type
Developing fruit albedo at 80 DAFB in pTriplEx2 vector	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK938092 vs. ExPASy Swiss-Prot
Match: ATPH_VITVI (ATP synthase subunit c, chloroplastic OS=Vitis vinifera GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK938092 vs. ExPASy Swiss-Prot
Match: ATPH_TRACE (ATP synthase subunit c, chloroplastic OS=Trachelium caeruleum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK938092 vs. ExPASy Swiss-Prot
Match: ATPH_TOBAC (ATP synthase subunit c, chloroplastic OS=Nicotiana tabacum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK938092 vs. ExPASy Swiss-Prot
Match: ATPH_SOLTU (ATP synthase subunit c, chloroplastic OS=Solanum tuberosum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK938092 vs. ExPASy Swiss-Prot
Match: ATPH_SOLLC (ATP synthase subunit c, chloroplastic OS=Solanum lycopersicum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK938092 vs. ExPASy Swiss-Prot
Match: ATPH_RANMC (ATP synthase subunit c, chloroplastic OS=Ranunculus macranthus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK938092 vs. ExPASy Swiss-Prot
Match: ATPH_PSINU (ATP synthase subunit c, chloroplastic OS=Psilotum nudum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK938092 vs. ExPASy Swiss-Prot
Match: ATPH_POPTR (ATP synthase subunit c, chloroplastic OS=Populus trichocarpa GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK938092 vs. ExPASy Swiss-Prot
Match: ATPH_POPAL (ATP synthase subunit c, chloroplastic OS=Populus alba GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK938092 vs. ExPASy Swiss-Prot
Match: ATPH_PLAOC (ATP synthase subunit c, chloroplastic OS=Platanus occidentalis GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

The following BLAST results are available for this feature:

BLAST of CK938092 vs. ExPASy Swiss-Prot

BLAST of CK938092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173


Match Name	E-value	Identity	Description
ATPH_VITVI	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Vitis vin...	[more]
ATPH_TRACE	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Tracheliu...	[more]
ATPH_TOBAC	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Nicotiana...	[more]
ATPH_SOLTU	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Solanum t...	[more]
ATPH_SOLLC	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Solanum l...	[more]
ATPH_RANMC	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Ranunculu...	[more]
ATPH_PSINU	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Psilotum ...	[more]
ATPH_POPTR	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Populus t...	[more]
ATPH_POPAL	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Populus a...	[more]
ATPH_PLAOC	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Platanus ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004478_B11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0002_IVF_B11 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK938092 ID=CK938092; Name=CK938092; organism=Citrus sinensis; type=EST; length=684bp
GGGGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCGA
GGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTG
GGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACT
GCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGGG
AAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAA
CAATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTT
GTTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTCTCTTAT
TTATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACTC
CTCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATACC
AGTTCGCCTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTTA
AGTGATGCTGCAACAAACGAGGGGTTTTGCAATGGACAGGAGTCCCGGCC
CCTAGTACTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAATTC
AAAGAAAGGATTTCGAAATCGAATTTTTGACCCTGTTTCGAAATGGGTAA
ATTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAA