CX675426

Overview
NameCX675426
Unique NameCX675426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX675426 vs. ExPASy Swiss-Prot
Match: SKI25_ARATH (F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana GN=SKIP25 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.376e-53
Identity = 114/229 (49.78%), Postives = 147/229 (64.19%), Query Frame = 3 
Query:  168 IAHLCLSHVH-PSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSS---STPIHLFTFDPVSSTW-DXXXXXXXXXXXXXXXXXXSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNS---RWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAV 821
            I+ +CLS VH PS+L  VC  WRRL+YSP FP F SLYALF   ++ +   +  +    F+PVSS W                    SF+S NLP+Q VS +GKLIL+A +    +PA++ PLIFDPI  +W+ GP + +PRRWCA G   GA+Y+ASGI SQFSS VAKSVEK DL    +N+    WEK  +++D RFSREAIDAVG++ KL +VNVKG    EGA+
Sbjct:   43 ISEICLSLVHRPSLLSAVCTRWRRLLYSPEFPSFPSLYALFVDSTSDTGRVNPSVRFMCFNPVSSKWYPLPPPPPDPPLHRILYRHPSFISFNLPIQCVSAAGKLILIAGSNQQLSPAISHPLIFDPISSSWSSGPRIGSPRRWCATGACDGAIYIASGISSQFSSTVAKSVEKLDLTEQNRNNHRFNWEKLRDMRDLRFSREAIDAVGYRRKLLMVNVKGDAVKEGAI 271
The following BLAST results are available for this feature:
BLAST of CX675426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI25_ARATH1.376e-5349.78F-box/kelch-repeat protein SKIP25 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_62B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B08-D16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675426 ID=CX675426; Name=CX675426; organism=Citrus sinensis; type=EST; length=821bp
CCCAACCCTTTCCCCTTGCCATGTCCAAATACCGGCTCACCATTTCTTCT
AAACGCCAAAAACTAACACAAACACTGACCACGCAACCTCTAGCTCAGGA
TCAAGATAAAGCTCAAGACGATGATGGTGATGATCATCAGCCACTGCTTC
CGGGCTTACCCGATCACATAGCTCACCTCTGCCTCTCCCACGTCCACCCA
TCAATCCTCCACAACGTCTGCCACTCCTGGCGTCGCCTCATTTACTCCCC
TTCTTTCCCTCCTTTCCTCTCCCTGTACGCCCTCTTCTCTCCTAAATCGA
ACTCTTCTTCTACTCCAATCCATTTATTCACTTTCGATCCCGTCTCCTCT
ACCTGGGACCCGCTCCCTCGTCCGCCCCCGGACCCGCCTCTCCACCTCAT
TCTCCACCACCCTTCTTTCCTCTCCCGCAACCTCCCCGTCCAGTTAGTCT
CCCTCTCCGGCAAGCTCATCCTCCTCGCCGCCACCACCCACAACTTCAAC
CCGGCGCTGACCCGCCCTCTCATCTTCGACCCCATTTGCCGGACCTGGAC
GTTCGGCCCCGAGCTCGTCACCCCGCGCCGGTGGTGCGCGGCGGGGTGCT
CTCGTGGCGCGGTGTATGTTGCCAGCGGGATCGGATCCCAGTTCTCTAGC
GACGTGGCGAAGTCCGTGGAGAAATGGGACTTGATGAACGGGGAAAAAAA
CTCGAGGTGGGAGAAGACGGGGGAGCTGAAAGACGGGAGGTTCAGCAGGG
AGGCGATAGACGCGGTGGGGTGGAAGGGGAAGCTGTGCTTGGTCAATGTG
AAGGGCGCTGAAGGTGCCGTC
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