CK938087
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 4.294e-33 Identity = 71/119 (59.66%), Postives = 89/119 (74.79%), Query Frame = 1 Query: 211 MKGGKSKSDTTNA--KLSVNXXXXXXXXXXXXXXX----DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 549 MKGGKSK+++ A KL+VN DPNKPKRP SAFFVFMEEFR+ + K+HP+NK+V+AVGK G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN++QAEG Sbjct: 1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 1.994e-30 Identity = 65/113 (57.52%), Postives = 83/113 (73.45%), Query Frame = 1 Query: 211 MKGGKSKSDTTNAKLSVNXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 549 MKGGKSK+ + N KL+V DPNKPKRP SAFFVFME+FR+ YK+ HP NKSVA VGK GG+KWK ++ A+KAP+++KAEKRK EYEK+++ YN++QA G Sbjct: 1 MKGGKSKAKSDN-KLAVKKQAADTKKTKKAVK-DPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG 111
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 3.184e-28 Identity = 66/116 (56.90%), Postives = 79/116 (68.10%), Query Frame = 1 Query: 211 MKGGKSKSDTTNA--KLSVNXXXXXXXXXXXXXXX-----DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 537 MKGGKSK ++ A KL+VN DPNKPKRP SAFFVFM +FREQYKKDHP NKSVAAVGK GE+WKS+SE +KAPYV +A K+K EYE ++ YN++ Sbjct: 1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK 116
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.338e-26 Identity = 63/118 (53.39%), Postives = 79/118 (66.95%), Query Frame = 1 Query: 211 MKGGKSKSDT-TNAKLSVNXXXXXXXXXXXXXXX--DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 555 MKG KSK +AKL+V DPNKPKR SAFFVFMEEFR+++K+ +PKNKSVAAVGK G++WKS+SE+DKAPYVAKA K K+EY K + YN+ ++ K Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAK 118
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.303e-25 Identity = 62/115 (53.91%), Postives = 76/115 (66.09%), Query Frame = 1 Query: 211 MKGGKSKSDT-TNAKLSVNXXXXXXXXXXXXXXX---DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 543 MKG KSK +AKL+V DPNKPKR SAFFVFM EFRE++K+ +PKNKSVAAVGK GE+WKS+SE++KAPYVAKA K K EY K + YN+ ++ Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGES 115
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGT_ONCMY (High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 1.696e-13 Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 310 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 537 DPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++ DK PY KA + K +YEKD+ Y + Sbjct: 90 DPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAYRNK 164
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGB3_MOUSE (High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3) HSP 1 Score: 75.0998 bits (183), Expect = 2.893e-13 Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 310 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 537 DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+ +K PYV KA K K +YEKD+ +Y + Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSK 163
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGB3_HUMAN (High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4) HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13 Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 1 Query: 310 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 537 DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++++K PY+ KA K K +YEKD+ +Y + Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSK 163
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGB3_BOVIN (High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13 Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1 Query: 310 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 537 DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+++K PY+ KA K K +YEKD+ +Y + Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSK 163
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGB3_CHICK (High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13 Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 310 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 537 DPN PKRP SAFF+F EFR + K +P S+ V K GE W ++S+ +K PY KA K K +YEKD+ +Y + Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSK 163 The following BLAST results are available for this feature:
BLAST of CK938087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
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Sequences
The
following sequences are available for this feature:
EST sequence >CK938087 ID=CK938087; Name=CK938087; organism=Citrus sinensis; type=EST; length=589bpback to top |