CK938087

Overview
NameCK938087
Unique NameCK938087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.294e-33
Identity = 71/119 (59.66%), Postives = 89/119 (74.79%), Query Frame = 1
Query:  211 MKGGKSKSDTTNA--KLSVNXXXXXXXXXXXXXXX----DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 549
            MKGGKSK+++  A  KL+VN                   DPNKPKRP SAFFVFMEEFR+ + K+HP+NK+V+AVGK  G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN++QAEG
Sbjct:    1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119          
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.994e-30
Identity = 65/113 (57.52%), Postives = 83/113 (73.45%), Query Frame = 1
Query:  211 MKGGKSKSDTTNAKLSVNXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 549
            MKGGKSK+ + N KL+V                DPNKPKRP SAFFVFME+FR+ YK+ HP NKSVA VGK GG+KWK ++ A+KAP+++KAEKRK EYEK+++ YN++QA G
Sbjct:    1 MKGGKSKAKSDN-KLAVKKQAADTKKTKKAVK-DPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG 111          
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.184e-28
Identity = 66/116 (56.90%), Postives = 79/116 (68.10%), Query Frame = 1
Query:  211 MKGGKSKSDTTNA--KLSVNXXXXXXXXXXXXXXX-----DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 537
            MKGGKSK ++  A  KL+VN                    DPNKPKRP SAFFVFM +FREQYKKDHP NKSVAAVGK  GE+WKS+SE +KAPYV +A K+K EYE  ++ YN++
Sbjct:    1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK 116          
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.338e-26
Identity = 63/118 (53.39%), Postives = 79/118 (66.95%), Query Frame = 1
Query:  211 MKGGKSKSDT-TNAKLSVNXXXXXXXXXXXXXXX--DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 555
            MKG KSK     +AKL+V                  DPNKPKR  SAFFVFMEEFR+++K+ +PKNKSVAAVGK  G++WKS+SE+DKAPYVAKA K K+EY K +  YN+ ++   K
Sbjct:    1 MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAK 118          
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.303e-25
Identity = 62/115 (53.91%), Postives = 76/115 (66.09%), Query Frame = 1
Query:  211 MKGGKSKSDT-TNAKLSVNXXXXXXXXXXXXXXX---DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 543
            MKG KSK     +AKL+V                   DPNKPKR  SAFFVFM EFRE++K+ +PKNKSVAAVGK  GE+WKS+SE++KAPYVAKA K K EY K +  YN+ ++
Sbjct:    1 MKGAKSKGAAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGES 115          
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGT_ONCMY (High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.696e-13
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  310 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 537
            DPN PKRP+SAFF+F  +FR Q K + P   S+  V K  GEKW +++  DK PY  KA + K +YEKD+  Y  +
Sbjct:   90 DPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAYRNK 164          
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGB3_MOUSE (High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.893e-13
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  310 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 537
            DPN PKRP S FF+F  EFR + K  +P   S+  V K  GE W ++S+ +K PYV KA K K +YEKD+ +Y  +
Sbjct:   89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSK 163          
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGB3_HUMAN (High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  310 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 537
            DPN PKRP S FF+F  EFR + K  +P   S+  V K  GE W ++++++K PY+ KA K K +YEKD+ +Y  +
Sbjct:   89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSK 163          
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGB3_BOVIN (High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  310 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 537
            DPN PKRP S FF+F  EFR + K  +P   S+  V K  GE W ++S+++K PY+ KA K K +YEKD+ +Y  +
Sbjct:   89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSK 163          
BLAST of CK938087 vs. ExPASy Swiss-Prot
Match: HMGB3_CHICK (High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  310 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKTGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 537
            DPN PKRP SAFF+F  EFR + K  +P   S+  V K  GE W ++S+ +K PY  KA K K +YEKD+ +Y  +
Sbjct:   89 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSK 163          
The following BLAST results are available for this feature:
BLAST of CK938087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
HMGL_SOYBN4.294e-3359.66HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI1.994e-3057.52HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_VICFA3.184e-2856.90HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE1.338e-2653.39DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT4.303e-2553.91HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
HMGT_ONCMY1.696e-1347.37High mobility group-T protein OS=Oncorhynchus myki... [more]
HMGB3_MOUSE2.893e-1347.37High mobility group protein B3 OS=Mus musculus GN=... [more]
HMGB3_HUMAN3.779e-1344.74High mobility group protein B3 OS=Homo sapiens GN=... [more]
HMGB3_BOVIN3.779e-1346.05High mobility group protein B3 OS=Bos taurus GN=HM... [more]
HMGB3_CHICK6.446e-1347.37High mobility group protein B3 OS=Gallus gallus GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004478_D01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0002_IVF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938087 ID=CK938087; Name=CK938087; organism=Citrus sinensis; type=EST; length=589bp
GGGGCAGCTCACACCCATAGCATCCGCTATTCACATCTGCGTCTCTCTCT
TTTTCTCTTTCCTCTTTTTCTCTCATTTGAAGCCCTAACCCTAGCTCTAT
CTTTCTTCAGAAACAGGTAATTCTCGTTCGATTCCGACGAATTTTCACGT
AATTTGTTCGATTTTAGCTCTAATTCTGCCTGATCCGTTGTTGATATTGC
AGGATTTGAAATGAAAGGAGGTAAATCAAAGTCAGATACCACAAACGCCA
AGCTCTCTGTGAACAAGAAGCCTGCCAAAGCTGGACGAAAATCGGGAAAG
GCAGCTAAGGACCCGAACAAGCCAAAGAGGCCAGCCAGCGCCTTCTTTGT
TTTCATGGAAGAATTCCGTGAACAATACAAGAAGGATCATCCTAAGAACA
AATCAGTTGCTGCTGTTGGTAAAACTGGTGGTGAGAAATGGAAGTCAATG
TCTGAAGCTGATAAAGCACCGTATGTTGCTAAGGCAGAGAAGCGCAAGGT
TGAGTATGAGAAGGATATGAAAAACTACAATAGGAGACAGGCGGAGGGAA
CTAAGCCGGAGGAAGAAGAGGAGTCTGAGAAGTCTATGT
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