CK938086 | Citrus Genome Database

Overview


Name	CK938086
Unique Name	CK938086
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	685

Libraries


Library Name	Type
Developing fruit albedo at 80 DAFB in pTriplEx2 vector	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CK938086 vs. ExPASy Swiss-Prot
Match: ATPH_VITVI (ATP synthase subunit c, chloroplastic OS=Vitis vinifera GN=atpH PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.552e-19
Identity = 55/80 (68.75%), Postives = 55/80 (68.75%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSXXFMEALTIYGLVVALGTFICESF 300
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLS  FMEALTIYGLVVAL       F
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80

HSP 2 Score: 21.9422 bits (45), Expect = 1.552e-19
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 2

Query:  278 ALLFANPFV 304
            ALLFANPFV
Sbjct:   73 ALLFANPFV 81

BLAST of CK938086 vs. ExPASy Swiss-Prot
Match: ATPH_TRACE (ATP synthase subunit c, chloroplastic OS=Trachelium caeruleum GN=atpH PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.552e-19
Identity = 55/80 (68.75%), Postives = 55/80 (68.75%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSXXFMEALTIYGLVVALGTFICESF 300
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLS  FMEALTIYGLVVAL       F
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80

HSP 2 Score: 21.9422 bits (45), Expect = 1.552e-19
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 2

Query:  278 ALLFANPFV 304
            ALLFANPFV
Sbjct:   73 ALLFANPFV 81

BLAST of CK938086 vs. ExPASy Swiss-Prot
Match: ATPH_TOBAC (ATP synthase subunit c, chloroplastic OS=Nicotiana tabacum GN=atpH PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.552e-19
Identity = 55/80 (68.75%), Postives = 55/80 (68.75%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSXXFMEALTIYGLVVALGTFICESF 300
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLS  FMEALTIYGLVVAL       F
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80

HSP 2 Score: 21.9422 bits (45), Expect = 1.552e-19
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 2

Query:  278 ALLFANPFV 304
            ALLFANPFV
Sbjct:   73 ALLFANPFV 81

BLAST of CK938086 vs. ExPASy Swiss-Prot
Match: ATPH_SOLTU (ATP synthase subunit c, chloroplastic OS=Solanum tuberosum GN=atpH PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.552e-19
Identity = 55/80 (68.75%), Postives = 55/80 (68.75%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSXXFMEALTIYGLVVALGTFICESF 300
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLS  FMEALTIYGLVVAL       F
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80

HSP 2 Score: 21.9422 bits (45), Expect = 1.552e-19
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 2

Query:  278 ALLFANPFV 304
            ALLFANPFV
Sbjct:   73 ALLFANPFV 81

BLAST of CK938086 vs. ExPASy Swiss-Prot
Match: ATPH_SOLLC (ATP synthase subunit c, chloroplastic OS=Solanum lycopersicum GN=atpH PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.552e-19
Identity = 55/80 (68.75%), Postives = 55/80 (68.75%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSXXFMEALTIYGLVVALGTFICESF 300
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLS  FMEALTIYGLVVAL       F
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80

HSP 2 Score: 21.9422 bits (45), Expect = 1.552e-19
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 2

Query:  278 ALLFANPFV 304
            ALLFANPFV
Sbjct:   73 ALLFANPFV 81

BLAST of CK938086 vs. ExPASy Swiss-Prot
Match: ATPH_RANMC (ATP synthase subunit c, chloroplastic OS=Ranunculus macranthus GN=atpH PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.552e-19
Identity = 55/80 (68.75%), Postives = 55/80 (68.75%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSXXFMEALTIYGLVVALGTFICESF 300
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLS  FMEALTIYGLVVAL       F
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80

HSP 2 Score: 21.9422 bits (45), Expect = 1.552e-19
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 2

Query:  278 ALLFANPFV 304
            ALLFANPFV
Sbjct:   73 ALLFANPFV 81

BLAST of CK938086 vs. ExPASy Swiss-Prot
Match: ATPH_PSINU (ATP synthase subunit c, chloroplastic OS=Psilotum nudum GN=atpH PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.552e-19
Identity = 55/80 (68.75%), Postives = 55/80 (68.75%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSXXFMEALTIYGLVVALGTFICESF 300
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLS  FMEALTIYGLVVAL       F
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80

HSP 2 Score: 21.9422 bits (45), Expect = 1.552e-19
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 2

Query:  278 ALLFANPFV 304
            ALLFANPFV
Sbjct:   73 ALLFANPFV 81

BLAST of CK938086 vs. ExPASy Swiss-Prot
Match: ATPH_POPTR (ATP synthase subunit c, chloroplastic OS=Populus trichocarpa GN=atpH PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.552e-19
Identity = 55/80 (68.75%), Postives = 55/80 (68.75%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSXXFMEALTIYGLVVALGTFICESF 300
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLS  FMEALTIYGLVVAL       F
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80

HSP 2 Score: 21.9422 bits (45), Expect = 1.552e-19
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 2

Query:  278 ALLFANPFV 304
            ALLFANPFV
Sbjct:   73 ALLFANPFV 81

BLAST of CK938086 vs. ExPASy Swiss-Prot
Match: ATPH_POPAL (ATP synthase subunit c, chloroplastic OS=Populus alba GN=atpH PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.552e-19
Identity = 55/80 (68.75%), Postives = 55/80 (68.75%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSXXFMEALTIYGLVVALGTFICESF 300
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLS  FMEALTIYGLVVAL       F
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80

HSP 2 Score: 21.9422 bits (45), Expect = 1.552e-19
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 2

Query:  278 ALLFANPFV 304
            ALLFANPFV
Sbjct:   73 ALLFANPFV 81

BLAST of CK938086 vs. ExPASy Swiss-Prot
Match: ATPH_PLAOC (ATP synthase subunit c, chloroplastic OS=Platanus occidentalis GN=atpH PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.552e-19
Identity = 55/80 (68.75%), Postives = 55/80 (68.75%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSXXFMEALTIYGLVVALGTFICESF 300
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLS  FMEALTIYGLVVAL       F
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80

HSP 2 Score: 21.9422 bits (45), Expect = 1.552e-19
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 2

Query:  278 ALLFANPFV 304
            ALLFANPFV
Sbjct:   73 ALLFANPFV 81

The following BLAST results are available for this feature:

BLAST of CK938086 vs. ExPASy Swiss-Prot

BLAST of CK938086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173


Match Name	E-value	Identity	Description
ATPH_VITVI	1.552e-19	68.75	ATP synthase subunit c, chloroplastic OS=Vitis vin...	[more]
ATPH_TRACE	1.552e-19	68.75	ATP synthase subunit c, chloroplastic OS=Tracheliu...	[more]
ATPH_TOBAC	1.552e-19	68.75	ATP synthase subunit c, chloroplastic OS=Nicotiana...	[more]
ATPH_SOLTU	1.552e-19	68.75	ATP synthase subunit c, chloroplastic OS=Solanum t...	[more]
ATPH_SOLLC	1.552e-19	68.75	ATP synthase subunit c, chloroplastic OS=Solanum l...	[more]
ATPH_RANMC	1.552e-19	68.75	ATP synthase subunit c, chloroplastic OS=Ranunculu...	[more]
ATPH_PSINU	1.552e-19	68.75	ATP synthase subunit c, chloroplastic OS=Psilotum ...	[more]
ATPH_POPTR	1.552e-19	68.75	ATP synthase subunit c, chloroplastic OS=Populus t...	[more]
ATPH_POPAL	1.552e-19	68.75	ATP synthase subunit c, chloroplastic OS=Populus a...	[more]
ATPH_PLAOC	1.552e-19	68.75	ATP synthase subunit c, chloroplastic OS=Platanus ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004478_C12 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0002_IVF_C12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK938086 ID=CK938086; Name=CK938086; organism=Citrus sinensis; type=EST; length=685bp
GGGGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCGA
GGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTG
GGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACT
GCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGGG
AAAAATACGAGGTACTTTATTGCTTAGTNNNNCTTTTATGGAAGCTTTAA
CAATTTATGGGCTGGTTGTAGCATTAGGCACTTTTATTTGCGAATCCTTT
TGTTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTCTCTTA
TTTATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAGGATTTAACT
CCTCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATAC
CACTTCGCCTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTT
AAGTGATGCTGCAACAAACGAGGGGTTTTGCAATGGACAGGAGTCCCGGC
CCCTAGTACTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAATT
CAAAGAAAGGATTTCGAAATCGAATTTTTGACCCTGTTTCGAAATGGGTA
AATTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAA