CX675422

Overview
NameCX675422
Unique NameCX675422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig755 contig Csv1_Contig755:95..922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675422 vs. ExPASy Swiss-Prot
Match: GALM_PIG (Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.853e-52
Identity = 109/243 (44.86%), Postives = 148/243 (60.91%), Query Frame = 3
Query:   63 EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEENQ 791
            E F+L +  ++V I ++G  IT+L V D+ G  +DVVLGF  ++ Y++   P+FG +VGRVANRI  G F+LDG EY L IN  PNSLHGG +GFDKV+W       G    I F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTGEI PV+GT FD     ++G  + E    G+DHN+ L   +E Q
Sbjct:   20 EKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFAELKEYLQ-KHPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVRGFDKVLWTPRVLSNG----IEFSRVSPDGEEGYPGELKVWVTYTLDGGELV-VNYRA-QASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTIEADAFLPVDETLIPTGEIAPVQGTAFDLRKPVELGKHLQEFHINGFDHNFCLKRSKEKQ 255          
BLAST of CX675422 vs. ExPASy Swiss-Prot
Match: GALM_RAT (Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.703e-51
Identity = 106/243 (43.62%), Postives = 149/243 (61.32%), Query Frame = 3
Query:   63 EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEENQ 791
            E F+L +  + V I ++G  IT+L V D+ G  +DVVLGF  +E Y++   P+FG +VGRVANRI  G+F++DG EY LPIN+ PNSLHGGF+GFDKV+W       G    + F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S +I DH + I      PVD+  +PTG I PV+GT FD     ++G  +      G+DHN+ L   +E +
Sbjct:   20 EKFQLRSDQLNVDIISWGCTITALQVKDRQGKASDVVLGFAELEGYLQ-KQPYFGAVVGRVANRIAKGRFTVDGKEYHLPINREPNSLHGGFRGFDKVLWTPQVLSNG----VQFSRVSPDGEEGYPGELKVWVTYTLDGGELV-VNYRA-QASQTTPVNLTNHSYFNLAGQGSPDIYDHEVTIAADAYLPVDETLIPTGVIAPVEGTAFDLRKPVELGKHLQSYHIHGFDHNFCLKESKEKK 255          
BLAST of CX675422 vs. ExPASy Swiss-Prot
Match: GALM_BOVIN (Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.905e-51
Identity = 108/243 (44.44%), Postives = 147/243 (60.49%), Query Frame = 3
Query:   63 EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEENQ 791
            E F+L +  ++V I ++G  IT+L V D+ G  +DVVLGFD +E Y++   P+FG +VGRVANRI  G F+LDG EY L IN  PNSLHGG KGFDKV+W       G    + F   S DGEEGYPG++ V   YTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTGEI  V+GT FD     ++G  + E    G+DHN+ L   +E +
Sbjct:   20 EKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFDELEGYLQ-KQPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVKGFDKVLWTPRVLSNG----VEFSRVSPDGEEGYPGELKVWVMYTLDGGELV-VNYRA-QASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTIEADAFLPVDEVLIPTGEIASVQGTAFDLRKPVELGKHLQEFHVNGFDHNFCLKGSKEKR 255          
BLAST of CX675422 vs. ExPASy Swiss-Prot
Match: GALM_PONAB (Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.955e-51
Identity = 106/241 (43.98%), Postives = 147/241 (61.00%), Query Frame = 3
Query:   63 EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEE 785
            E F+L +  ++V I ++G  IT+L V D+ G  +DVVLGF  +E Y++   P+FG ++GRVANRI  G F +DG EY L INK PNSLHGG +GFDKV+W       G    I F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTGE+ PV+GT FD     ++G  + +    G+DHN+ L   +E
Sbjct:   20 EKFQLQSDLLRVDIISWGCTITALEVKDRQGRSSDVVLGFAELEGYLQ-KQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSNG----IQFSRISPDGEEGYPGELKVWVTYTLDGGELV-VNYRA-QASQATPVNLTNHSYFNLAGQGSPNIYDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSKE 253          
BLAST of CX675422 vs. ExPASy Swiss-Prot
Match: GALM_MOUSE (Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.472e-51
Identity = 105/243 (43.21%), Postives = 148/243 (60.91%), Query Frame = 3
Query:   63 EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEENQ 791
            E F+L +  + V I ++G  IT+L V D+ G  +DVVLGF  +E Y++   P+FG +VGRVANRI  G+F++ G EY LP+N+ PNSLHGGF GFDKV+W       G    + F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTG I PV+GT FD     ++G  + +    G+DHN+ L   +E +
Sbjct:   20 EKFQLRSDQLSVDIISWGCTITALQVKDRQGKASDVVLGFAELEGYLQ-KQPYFGAVVGRVANRIAKGRFTIGGKEYHLPVNREPNSLHGGFTGFDKVLWTPQVLTNG----VQFFRVSPDGEEGYPGELKVWVTYTLDGGELV-INYRA-QASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTIAADAYLPVDETLIPTGVIAPVEGTAFDLRKPVELGTHLQDYHIHGFDHNFCLKESKEKK 255          
BLAST of CX675422 vs. ExPASy Swiss-Prot
Match: GALM_HUMAN (Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.104e-50
Identity = 105/241 (43.57%), Postives = 147/241 (61.00%), Query Frame = 3
Query:   63 EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEE 785
            E F+L +  ++V I ++G  IT+L V D+ G  +DVVLGF  +E Y++   P+FG ++GRVANRI  G F +DG EY L INK PNSLHGG +GFDKV+W       G    + F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTGE+ PV+GT FD     ++G  + +    G+DHN+ L   +E
Sbjct:   20 EKFQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQ-KQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSNG----VQFSRISPDGEEGYPGELKVWVTYTLDGGELI-VNYRA-QASQATPVNLTNHSYFNLAGQASPNINDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSKE 253          
BLAST of CX675422 vs. ExPASy Swiss-Prot
Match: GALM_ACICA (Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.491e-42
Identity = 95/243 (39.09%), Postives = 136/243 (55.97%), Query Frame = 3
Query:   78 NNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAP---FFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAE-YKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNL--AGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINE-----VPGLGYDHNYVLD 773
            NN  + V   ++G +IT +  PD  G   ++VLGFD ++ Y          FG ++GR ANRI + KFSLDG  Y L  N  PNSLH G  GFDK VW+V     KGE    + K  S +G++G+PG + V   Y+L+     +++ +A   ++PT ++L  H+Y+NL  AG++   +LDH +Q+    I   DQN++PTGEI  V GTPFDF   K I   I         G GYD  +V++
Sbjct:   44 NNNGVSVSFISFGGVITQILTPDAQGKQNNIVLGFDDLKGYEVTDTKEGIHFGGLIGRYANRIGNAKFSLDGKTYNLEKNNGPNSLHSGNPGFDKRVWQVKPLVSKGETVKASLKLTSPNGDQGFPGKLDVEVIYSLSDQNEFKIEYKA-KTDQPTVVNLTNHSYFNLSGAGNNPYGVLDHVVQLNAGRILVTDQNSLPTGEIASVAGTPFDFRMPKAIVKDIRANNQQLAYGYGYDQTWVIN 285          
BLAST of CX675422 vs. ExPASy Swiss-Prot
Match: GALM_SHIFL (Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.958e-31
Identity = 79/235 (33.62%), Postives = 123/235 (52.34%), Query Frame = 3
Query:   78 NNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIG----ASINEVPGLGYDHNYVL 770
            NN  M V + ++GA + S  +P   G+  + +LG  S E Y   AA F G  +GR ANRI + +++ DG   TL  ++  N LHGG +GFDK  W++       +  + F   S DG++G+PG++     Y LT    + +   A  + KP P+++  H Y+NL G  S ++ +H +QI      PVD+  +P   +  V GT FDF + K I     A  ++    GYDH ++L
Sbjct:   22 NNAGMVVTLMDWGATLLSARIPLSDGSVREALLGCASPECYQDQAA-FLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQLHGGPEGFDKRRWQIVNQ---NDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRATVD-KPCPVNMTNHVYFNLDGEQS-DVRNHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAFLL 250          
BLAST of CX675422 vs. ExPASy Swiss-Prot
Match: GALM_ECOLI (Aldose 1-epimerase OS=Escherichia coli (strain K12) GN=galM PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.958e-31
Identity = 79/235 (33.62%), Postives = 123/235 (52.34%), Query Frame = 3
Query:   78 NNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIG----ASINEVPGLGYDHNYVL 770
            NN  M V + ++GA + S  +P   G+  + +LG  S E Y   AA F G  +GR ANRI + +++ DG   TL  ++  N LHGG +GFDK  W++       +  + F   S DG++G+PG++     Y LT    + +   A  + KP P+++  H Y+NL G  S ++ +H +QI      PVD+  +P   +  V GT FDF + K I     A  ++    GYDH ++L
Sbjct:   22 NNAGMVVTLMDWGATLLSARIPLSDGSVREALLGCASPECYQDQAA-FLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQLHGGPEGFDKRRWQIVNQ---NDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRATVD-KPCPVNMTNHVYFNLDGEQS-DVRNHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAFLL 250          
BLAST of CX675422 vs. ExPASy Swiss-Prot
Match: GALM_HAEIN (Aldose 1-epimerase OS=Haemophilus influenzae GN=galM PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.452e-26
Identity = 78/236 (33.05%), Postives = 126/236 (53.39%), Query Frame = 3
Query:   78 NNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSG-NILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASI---NEVPGLGYDHNYVLD 773
            N   M+V+  ++GA   S  VP  +    +V+LG   V+ Y    + + G  VGR ANRI + +F L+G    L  N+  + LHGG +GFDK  W + E   GEN  + F   S DG++G+PG+V V  TYTLT   +++++   + + K T ++L  HTY+NL     G ++ +H++++      PVD   +P   +  V  T FDF   K I       ++    GYDH+++++
Sbjct:   22 NENGMRVQFMDWGATWLSCKVP-VNDTLREVLLGC-KVDNYPTHQS-YLGASVGRYANRIANAQFELNGELIKLSSNQGKHQLHGG-EGFDKRRWNIQEC--GEN-FVCFSLHSVDGDQGFPGNVDVSVTYTLTGDNSVKIEYAGMCD-KDTALNLTNHTYFNLENAEQGSDVREHTLRLNADFYLPVDNEGIPNSPLKHVVNTSFDFRIAKPIKQDFLQGDQQATKGYDHSFIVN 249          
The following BLAST results are available for this feature:
BLAST of CX675422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GALM_PIG5.853e-5244.86Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1[more]
GALM_RAT1.703e-5143.62Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE... [more]
GALM_BOVIN2.905e-5144.44Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1[more]
GALM_PONAB4.955e-5143.98Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV... [more]
GALM_MOUSE6.472e-5143.21Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV... [more]
GALM_HUMAN1.104e-5043.57Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV... [more]
GALM_ACICA5.491e-4239.09Aldose 1-epimerase OS=Acinetobacter calcoaceticus ... [more]
GALM_SHIFL1.958e-3133.62Aldose 1-epimerase OS=Shigella flexneri GN=galM PE... [more]
GALM_ECOLI1.958e-3133.62Aldose 1-epimerase OS=Escherichia coli (strain K12... [more]
GALM_HAEIN1.452e-2633.05Aldose 1-epimerase OS=Haemophilus influenzae GN=ga... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62B05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B05-D10-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675422 ID=CX675422; Name=CX675422; organism=Citrus sinensis; type=EST; length=827bp
AATTCTATTAGTACTCAAATTTCACAACAAAGAGAAAAATGGCTGATCAT
ACATTAAAACCAGAAGTGTTTGAACTGAACAATGGAAGCATGCAAGTCAA
AATTACCAATTATGGAGCCATTATCACCTCACTTTCTGTACCTGACAAAC
ATGGAAATTGGGCTGACGTTGTTCTTGGATTCGACTCTGTCGAACCATAC
GTGAAAGGTGCTGCACCTTTTTTTGGCTGCATTGTGGGTAGGGTTGCTAA
CAGAATTAAAGATGGGAAGTTTTCTCTCGACGGGGTTGAATACACTTTGC
CCATCAACAAGCCACCAAACAGTCTCCATGGTGGGTTCAAGGGTTTTGAT
AAAGTTGTCTGGGAGGTAGCAGAATATAAGAAAGGTGAAAACCCTTCCAT
TACTTTCAAGTATCGCAGCCGTGATGGCGAGGAAGGTTACCCAGGGGATG
TTTCTGTGATGGCAACCTACACACTAACATCAAGCACGACAATGAGGCTT
GACATGGAAGCAGTTCCAGAAAACAAGCCGACCCCAATCAGTTTAGCTCA
ACACACGTACTGGAACTTAGCAGGCCATCATTCAGGGAACATACTTGACC
ACTCAATTCAAATATGGGGATCACACATTACTCCTGTAGATCAGAACACG
GTCCCAACTGGAGAAATTATGCCAGTCAAGGGCACCCCTTTTGATTTCAC
CACTGAGAAAAAGATTGGTGCATCAATCAATGAAGTACCTGGTTTAGGGT
ATGATCACAACTATGTTCTTGATTGTGGAGAAGAAAATCAGGTCTGAAAC
ATGCTGCAAAACTGAAGGAACCATCCA
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