CN187542

Overview
NameCN187542
Unique NameCN187542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187542 vs. ExPASy Swiss-Prot
Match: CYBP_RAT (Calcyclin-binding protein OS=Rattus norvegicus GN=Cacybp PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 56/146 (38.36%), Postives = 87/146 (59.59%), Query Frame = 1
Query:   34 ITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPGLNQEIVPEKSKVLVKPTRVVIMLFKASEG---NWLDLQYKE--DKLKPNLDKERDPMAGIRDLMKNMYEEGDDEMKRTIAKAWTDAR 447
            + + ++ WDQ ++ VKIYI+L GV Q   + ++  F + SFD+   ++ GKNY      L + I  E S   VK   V+I+  K +E    ++L    KE  +K KP+ D E DP  G+ +++K +YE+GDD+MKRTI KAW ++R
Sbjct:   74 VKISNYGWDQSDKFVKIYITLTGVHQVPAENVQVHFTERSFDLLVKNLNGKNYSMIVNNLLKPISVESSSKKVKTDTVIILCRKKAENTRWDYLTQVEKECKEKEKPSYDTEADPSEGLMNVLKKIYEDGDDDMKRTINKAWVESR 219          
BLAST of CN187542 vs. ExPASy Swiss-Prot
Match: CYBP_MOUSE (Calcyclin-binding protein OS=Mus musculus GN=Cacybp PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 56/146 (38.36%), Postives = 87/146 (59.59%), Query Frame = 1
Query:   34 ITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPGLNQEIVPEKSKVLVKPTRVVIMLFKASEG---NWLDLQYKE--DKLKPNLDKERDPMAGIRDLMKNMYEEGDDEMKRTIAKAWTDAR 447
            + + ++ WDQ ++ VKIYI+L GV Q   + ++  F + SFD+   ++ GKNY      L + I  E S   VK   V+I+  K +E    ++L    KE  +K KP+ D E DP  G+ +++K +YE+GDD+MKRTI KAW ++R
Sbjct:   74 VKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKNYSMIVNNLLKPISVESSSKKVKTDTVIILCRKKAENTRWDYLTQVEKECKEKEKPSYDTEADPSEGLMNVLKKIYEDGDDDMKRTINKAWVESR 219          
BLAST of CN187542 vs. ExPASy Swiss-Prot
Match: CYBP_PONAB (Calcyclin-binding protein OS=Pongo abelii GN=CACYBP PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 53/146 (36.30%), Postives = 85/146 (58.22%), Query Frame = 1
Query:   34 ITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPGLNQEIVPEKSKVLVKPTRVVIMLFKASEGNWLDL-----QYKEDKLKPNLDKERDPMAGIRDLMKNMYEEGDDEMKRTIAKAWTDAR 447
            + + ++ WDQ ++ VKIYI+L GV Q   + ++  F + SFD+   ++ GK+Y      L + I  E S   VK   V+I+  K  E    D      + +++K KP+ D E DP  G+ +++K +YE+GDD+MKRTI KAW ++R
Sbjct:   73 VKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKERKEKEKPSYDAETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESR 218          
BLAST of CN187542 vs. ExPASy Swiss-Prot
Match: CYBP_BOVIN (Calcyclin-binding protein OS=Bos taurus GN=CACYBP PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 55/146 (37.67%), Postives = 87/146 (59.59%), Query Frame = 1
Query:   34 ITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPGLNQEIVPEKSKVLVKPTRVVIMLFKASEG---NWLDLQYKE--DKLKPNLDKERDPMAGIRDLMKNMYEEGDDEMKRTIAKAWTDAR 447
            + + ++ WDQ ++ VKIYI+L GV Q   + ++  F + SFD+   ++ GK+Y      L + I  E S   VK   V+I+  K +E    ++L    KE  +K KP+ D E DP  G+ +++K +YE+GDD+MKRTI KAW ++R
Sbjct:   75 VKISNYGWDQSDKFVKIYITLPGVHQVPAESVQVNFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKAENTRWDYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESR 220          
BLAST of CN187542 vs. ExPASy Swiss-Prot
Match: CYBP_MACFA (Calcyclin-binding protein OS=Macaca fascicularis GN=CACYBP PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 55/146 (37.67%), Postives = 86/146 (58.90%), Query Frame = 1
Query:   34 ITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPGLNQEIVPEKSKVLVKPTRVVIMLFKASEG---NWLDLQYKE--DKLKPNLDKERDPMAGIRDLMKNMYEEGDDEMKRTIAKAWTDAR 447
            + + ++ WDQ ++ VKIYI+L GV Q   + ++  F + SFD+   ++ GK+Y      L + I  E S   VK   V+I+  K  E    ++L    KE  +K KP+ D E DP  G+ +++K +YE+GDD+MKRTI KAW ++R
Sbjct:   73 VKISNYGWDQSDKFVKIYITLSGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESR 218          
BLAST of CN187542 vs. ExPASy Swiss-Prot
Match: CYBP_HUMAN (Calcyclin-binding protein OS=Homo sapiens GN=CACYBP PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 55/146 (37.67%), Postives = 86/146 (58.90%), Query Frame = 1
Query:   34 ITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPGLNQEIVPEKSKVLVKPTRVVIMLFKASEG---NWLDLQYKE--DKLKPNLDKERDPMAGIRDLMKNMYEEGDDEMKRTIAKAWTDAR 447
            + + ++ WDQ ++ VKIYI+L GV Q   + ++  F + SFD+   ++ GK+Y      L + I  E S   VK   V+I+  K  E    ++L    KE  +K KP+ D E DP  G+ +++K +YE+GDD+MKRTI KAW ++R
Sbjct:   73 VKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESR 218          
The following BLAST results are available for this feature:
BLAST of CN187542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CYBP_RAT1.166e-2038.36Calcyclin-binding protein OS=Rattus norvegicus GN=... [more]
CYBP_MOUSE1.166e-2038.36Calcyclin-binding protein OS=Mus musculus GN=Cacyb... [more]
CYBP_PONAB1.289e-1936.30Calcyclin-binding protein OS=Pongo abelii GN=CACYB... [more]
CYBP_BOVIN1.289e-1937.67Calcyclin-binding protein OS=Bos taurus GN=CACYBP ... [more]
CYBP_MACFA2.199e-1937.67Calcyclin-binding protein OS=Macaca fascicularis G... [more]
CYBP_HUMAN2.872e-1937.67Calcyclin-binding protein OS=Homo sapiens GN=CACYB... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0004K01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004K01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187542 ID=CN187542; Name=CN187542; organism=Citrus sinensis; type=EST; length=697bp
CCCCCTTTCTCTTCTACTCCAGCACTCAACTATATTACGCTTGGATCATT
CAGCTGGGATCAGGATAATGAAAAAGTCAAGATATATATTTCTTTAGAGG
GAGTAGTCCAGGATAAAATGGAAGCAGAGTTCAAGCAGTGGTCCTTTGAT
GTCAAATTCCATGATGTCCAAGGGAAGAATTACCGGTTTACTAGCCCAGG
GTTGAACCAGGAGATTGTTCCTGAGAAAAGCAAGGTGCTGGTTAAACCCA
CAAGGGTTGTCATCATGCTCTTTAAAGCTTCAGAGGGAAATTGGTTAGAC
TTACAGTACAAAGAGGATAAGCTGAAGCCAAATCTGGATAAAGAACGAGA
TCCTATGGCTGGAATTAGGGATTTGATGAAGAATATGTACGAGGAAGGTG
ACGACGAAATGAAGCGAACAATTGCAAAAGCTTGGACAGATGCTAGATCT
GGTAAAACAGCTGATCCTCTGAAGGGATATCCCTAAATAAACTAAAGATG
TACTCGGATACTCCCCAAAGATGGTGAGGTTCTGTGTATGGTCTTCCCTT
TGTCTGAAGTTACCATTACTGTCATTTTCGTGCATTTTGTGTTGCGAACT
TGCGGTCACAAGTATCTGCCATTTGGGGATGTCATTTCCTTGTTCAAGAT
GGAAGCAGCTTGTGCTGGGGTTGTTATTGGATTTCAGTTATTTTAAT
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