CX675421

Overview
NameCX675421
Unique NameCX675421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig755 contig Csv1_Contig755:387..1288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675421 vs. ExPASy Swiss-Prot
Match: GALM_RAT (Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.493e-51
Identity = 108/254 (42.52%), Postives = 149/254 (58.66%), Query Frame = -2
Query:  140 LPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYT-XXXXXXXXXXXXXXXXKHSGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSV 898
            LPIN+ PNSLHGGF+GFDKV+W       G    + F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S +I DH + I      PVD+  +PTG I PV+GT FD     ++G  +      G+DHN+ L   +EK   K  A++   ++ R+L ++T  PG+QFYT                 KHSG CLETQ +P+A+NQP FP +++RPGE Y HT  F+FSV
Sbjct:   97 LPINREPNSLHGGFRGFDKVLWTPQVLSNG----VQFSRVSPDGEEGYPGELKVWVTYTLDGGELV-VNYRA-QASQTTPVNLTNHSYFNLAGQGSPDIYDHEVTIAADAYLPVDETLIPTGVIAPVEGTAFDLRKPVELGKHLQSYHIHGFDHNFCLKESKEK---KFCARVHHAASGRILEVYTTQPGVQFYTGNFLDGTLKGKSGEVYPKHSGFCLETQNWPDAVNQPQFPPILLRPGEEYNHTTWFKFSV 341          
BLAST of CX675421 vs. ExPASy Swiss-Prot
Match: GALM_MOUSE (Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.493e-51
Identity = 107/254 (42.13%), Postives = 150/254 (59.06%), Query Frame = -2
Query:  140 LPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYT-XXXXXXXXXXXXXXXXKHSGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSV 898
            LP+N+ PNSLHGGF GFDKV+W       G    + F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTG I PV+GT FD     ++G  + +    G+DHN+ L   +EK   K  A+++  ++ R+L ++T  PG+QFYT                 KHSG+CLETQ +P+++NQP FP  ++RPGE Y HT  F+FSV
Sbjct:   97 LPVNREPNSLHGGFTGFDKVLWTPQVLTNG----VQFFRVSPDGEEGYPGELKVWVTYTLDGGELV-INYRA-QASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTIAADAYLPVDETLIPTGVIAPVEGTAFDLRKPVELGTHLQDYHIHGFDHNFCLKESKEK---KFCARVRHAASGRILEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGLCLETQNWPDSVNQPQFPPALLRPGEEYNHTTWFKFSV 341          
BLAST of CX675421 vs. ExPASy Swiss-Prot
Match: GALM_PIG (Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.950e-51
Identity = 111/254 (43.70%), Postives = 147/254 (57.87%), Query Frame = -2
Query:  140 LPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYT-XXXXXXXXXXXXXXXXKHSGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSV 898
            L IN  PNSLHGG +GFDKV+W       G    I F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTGEI PV+GT FD     ++G  + E    G+DHN+ L   +EK   +  A++    + RVL ++T  PG+QFYT                 KHSG CLETQ +PNA+NQP+FP V+++PGE Y HT  F FSV
Sbjct:   97 LAINNGPNSLHGGVRGFDKVLWTPRVLSNG----IEFSRVSPDGEEGYPGELKVWVTYTLDGGELV-VNYRA-QASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTIEADAFLPVDETLIPTGEIAPVQGTAFDLRKPVELGKHLQEFHINGFDHNFCLKRSKEK---QFCARVHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAVYPKHSGFCLETQNWPNAVNQPHFPPVLLKPGEEYNHTTWFVFSV 341          
BLAST of CX675421 vs. ExPASy Swiss-Prot
Match: GALM_HUMAN (Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.345e-51
Identity = 109/254 (42.91%), Postives = 148/254 (58.27%), Query Frame = -2
Query:  140 LPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYT-XXXXXXXXXXXXXXXXKHSGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSV 898
            L INK PNSLHGG +GFDKV+W       G    + F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTGE+ PV+GT FD     ++G  + +    G+DHN+ L   +EK      A++   ++ RVL ++T  PG+QFYT                 KHSG CLETQ +P+A+NQP FP V++RPGE Y HT  F+FSV
Sbjct:   97 LAINKEPNSLHGGVRGFDKVLWTPRVLSNG----VQFSRISPDGEEGYPGELKVWVTYTLDGGELI-VNYRA-QASQATPVNLTNHSYFNLAGQASPNINDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSKEK---HFCARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFSV 341          
BLAST of CX675421 vs. ExPASy Swiss-Prot
Match: GALM_PONAB (Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.679e-51
Identity = 109/254 (42.91%), Postives = 147/254 (57.87%), Query Frame = -2
Query:  140 LPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYT-XXXXXXXXXXXXXXXXKHSGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSV 898
            L INK PNSLHGG +GFDKV+W       G    I F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTGE+ PV+GT FD     ++G  + +    G+DHN+ L   +EK      A++   ++ RVL ++T  PG+QFY                  KHSG CLETQ +P+A+NQP FP V++RPGE Y HT  F+FSV
Sbjct:   97 LAINKEPNSLHGGVRGFDKVLWTPRVLSNG----IQFSRISPDGEEGYPGELKVWVTYTLDGGELV-VNYRA-QASQATPVNLTNHSYFNLAGQGSPNIYDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSKEK---HFCARVHHAASGRVLEVYTTQPGVQFYMGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFSV 341          
BLAST of CX675421 vs. ExPASy Swiss-Prot
Match: GALM_BOVIN (Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.070e-49
Identity = 108/254 (42.52%), Postives = 146/254 (57.48%), Query Frame = -2
Query:  140 LPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYT-XXXXXXXXXXXXXXXXKHSGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSV 898
            L IN  PNSLHGG KGFDKV+W       G    + F   S DGEEGYPG++ V   YTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTGEI  V+GT FD     ++G  + E    G+DHN+ L   +EK   +  A++    + RVL ++T  PG+QFYT                 KHSG CLETQ +P+A+NQP+FP V+++PGE Y HT  F+FSV
Sbjct:   97 LAINNGPNSLHGGVKGFDKVLWTPRVLSNG----VEFSRVSPDGEEGYPGELKVWVMYTLDGGELV-VNYRA-QASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTIEADAFLPVDEVLIPTGEIASVQGTAFDLRKPVELGKHLQEFHVNGFDHNFCLKGSKEK---RFCARVHHAGSGRVLEVYTTQPGVQFYTGNFLDGTLKGKSGAGYPKHSGFCLETQSWPDAVNQPHFPPVLLKPGEEYDHTTWFKFSV 341          
BLAST of CX675421 vs. ExPASy Swiss-Prot
Match: GALM_ACICA (Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.397e-38
Identity = 91/260 (35.00%), Postives = 139/260 (53.46%), Query Frame = -2
Query:  137 NKPPNSLHGGFKGFDKVVWEVAEY-KKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNL--AGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINE-----VPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXXXXXXXXKHS-GVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEFSVE 889
            N  PNSLH G  GFDK VW+V     KGE    + K  S +G++G+PG + V   Y+L+     +++ +A  + +PT ++L  H+Y+NL  AG++   +LDH +Q+    I   DQN++PTGEI  V GTPFDF   K I   I         G GYD  +V++  + +  L  AA + +P + R + + T  P +Q YT                + +  + LETQ FP++ NQP FPS  + P ++Y    +F+F V+
Sbjct:  123 NNGPNSLHSGNPGFDKRVWQVKPLVSKGETVKASLKLTSPNGDQGFPGKLDVEVIYSLSDQNEFKIEYKAKTD-QPTVVNLTNHSYFNLSGAGNNPYGVLDHVVQLNAGRILVTDQNSLPTGEIASVAGTPFDFRMPKAIVKDIRANNQQLAYGYGYDQTWVIN-QKSQGKLNLAAIVVDPKSKRTMQVLTTEPSVQMYTADHLLGNIVGANGVLYRQADALALETQHFPDSPNQPTFPSTRLNPNQTYNSVTVFKFGVQ 380          
BLAST of CX675421 vs. ExPASy Swiss-Prot
Match: GALM_SHIFL (Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.320e-28
Identity = 78/261 (29.89%), Postives = 124/261 (47.51%), Query Frame = -2
Query:  137 TLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIG----ASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXXXXXXXXKHSGVCLETQGFPNAINQPNF--PSVVVRPGESYQHTMLFEFSVE 901
            TL  ++  N LHGG +GFDK  W++      +   + F   S DG++G+PG++     Y LT    + +   A  + KP P+++  H Y+NL G  S ++ +H +QI      PVD+  +P   +  V GT FDF + K I     A  ++    GYDH ++L    +  G K AA +        L ++T AP +QFY+                   G+ LE++  P++ N P +  P   +RPGE Y     ++F  E
Sbjct:   93 TLSPSQGVNQLHGGPEGFDKRRWQIVNQNDRQ---VLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRATVD-KPCPVNMTNHVYFNLDGEQS-DVRNHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQA--KGDGKKVAAHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEEYSSLTEYQFIAE 346          
BLAST of CX675421 vs. ExPASy Swiss-Prot
Match: GALM_ECOLI (Aldose 1-epimerase OS=Escherichia coli (strain K12) GN=galM PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.320e-28
Identity = 78/261 (29.89%), Postives = 124/261 (47.51%), Query Frame = -2
Query:  137 TLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIG----ASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXXXXXXXXKHSGVCLETQGFPNAINQPNF--PSVVVRPGESYQHTMLFEFSVE 901
            TL  ++  N LHGG +GFDK  W++      +   + F   S DG++G+PG++     Y LT    + +   A  + KP P+++  H Y+NL G  S ++ +H +QI      PVD+  +P   +  V GT FDF + K I     A  ++    GYDH ++L    +  G K AA +        L ++T AP +QFY+                   G+ LE++  P++ N P +  P   +RPGE Y     ++F  E
Sbjct:   93 TLSPSQGVNQLHGGPEGFDKRRWQIVNQNDRQ---VLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRATVD-KPCPVNMTNHVYFNLDGEQS-DVRNHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQA--KGDGKKVAAHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEEYSSLTEYQFIAE 346          
BLAST of CX675421 vs. ExPASy Swiss-Prot
Match: GALM_HAEIN (Aldose 1-epimerase OS=Haemophilus influenzae GN=galM PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 9.122e-25
Identity = 77/253 (30.43%), Postives = 121/253 (47.83%), Query Frame = -2
Query:  161 LPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSG-NILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASI---NEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXXXXXXXXKHSGVCLETQGFPNAINQP---NFPSVVVRPGESYQHT 898
            L  N+  + LHGG +GFDK  W + E   GEN  + F   S DG++G+PG+V V  TYTLT   +++++   + + K T ++L  HTY+NL     G ++ +H++++      PVD   +P   +  V  T FDF   K I       ++    GYDH+++++    K+  K    L  P+    L + T+   +Q YT                  SG+ LETQ  P+  N P   N+  +    G  YQ T
Sbjct:   92 LSSNQGKHQLHGG-EGFDKRRWNIQEC--GEN-FVCFSLHSVDGDQGFPGNVDVSVTYTLTGDNSVKIEYAGMCD-KDTALNLTNHTYFNLENAEQGSDVREHTLRLNADFYLPVDNEGIPNSPLKHVVNTSFDFRIAKPIKQDFLQGDQQATKGYDHSFIVN----KAWQKPCVLLTSPTGDLSLEVRTSQAALQVYTGNYLAGTPTRNGELYADFSGIALETQCLPDTPNHPEWQNYGGIQKAGGRYYQWT 335          
The following BLAST results are available for this feature:
BLAST of CX675421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GALM_RAT1.493e-5142.52Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE... [more]
GALM_MOUSE1.493e-5142.13Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV... [more]
GALM_PIG1.950e-5143.70Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1[more]
GALM_HUMAN4.345e-5142.91Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV... [more]
GALM_PONAB9.679e-5142.91Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV... [more]
GALM_BOVIN1.070e-4942.52Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1[more]
GALM_ACICA9.397e-3835.00Aldose 1-epimerase OS=Acinetobacter calcoaceticus ... [more]
GALM_SHIFL2.320e-2829.89Aldose 1-epimerase OS=Shigella flexneri GN=galM PE... [more]
GALM_ECOLI2.320e-2829.89Aldose 1-epimerase OS=Escherichia coli (strain K12... [more]
GALM_HAEIN9.122e-2530.43Aldose 1-epimerase OS=Haemophilus influenzae GN=ga... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62B05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B05-D10-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675421 ID=CX675421; Name=CX675421; organism=Citrus sinensis; type=EST; length=902bp
TTTCATACAATTGTCTTATAATATTATTTTATTAAGAGATTTAGCCAACA
TCCAAACATCAGTACTCGCCATGGTATGCAAACCCATGAACAATAACCTT
ATTCCAAGAACTACTCTTCAAGAGACTAATAGTTCACTCAACTGAAAACT
CAAACAACATAGTATGTTGGTAGCTCTCACCGGGTCGAACCACAACAGAA
GGGAAGTTAGGTTGATTTATGGCGTTAGGAAACCCCTGCGTCTCCAAGCA
GACACCTGAGTGCTTTCCATAAACTGCACCCCCCTTTCCAACAACTCCGT
TAACATAGTTACCAGTGTAAAACTGCATGCCTGGGGCATTGGTCCATAAA
TTAAGGACCCTTGAGGTTGATGGTTCCTTCAGTTTTGCAGCATGTTTCAG
ACCTGATTTCTCTTCTCCACAATCAAGAACATAGTTGTGATCATACCCTA
AACCAGGTACTTCATTGATTGATGCACCAATCTTTTTCTCAGTGGTGAAA
TCAAAAGGGGTGCCCTTGACTGGCATAATTTCTCCAGTTGGGACCGTGTT
CTGATCTACAGGAGTAATGTGTGATCCCCATATTTGAATTGAGTGGTCAA
GTATGTTCCCTGAATGATGGCCTGCTAAGTTCCAGTACGTGTGTTGAGCT
AAACTGATTGGGGTCGGCTTGTTTTCTGGAACTGCTTCCATGTCAAGCCT
CATTGTCGTGCTTGATGTTAGTGTGTAGGTTGCCATCACAGAAACATCCC
CTGGGTAACCTTCCTCGCCATCACGGCTGCGATACTTGAAAGTAATGGAA
GGGTTTTCACCTTTCTTATATTCTGCTACCTCCCAGACAACTTTATCAAA
ACCCTTGAACCCACCATGGAGACTGTTTGGTGGCTTGTTGATGGGCAAAG
TG
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