CK938056

Overview
NameCK938056
Unique NameCK938056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938056 vs. ExPASy Swiss-Prot
Match: GRXS9_ARATH (Monothiol glutaredoxin-S9 OS=Arabidopsis thaliana GN=GRXS9 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.245e-38
Identity = 71/98 (72.45%), Postives = 90/98 (91.84%), Query Frame = 1
Query:  217 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGYNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLKPYQ 510
            MDKV R++SEKGVVIFSKSSCC+ YAV +LFQ+LGVHP V+EID+DPE +E+EKALMR+G + PVPA+F+ G+L+GSTNEVMSLHLSG+L+PL+KP+Q
Sbjct:    1 MDKVVRMSSEKGVVIFSKSSCCMSYAVQVLFQDLGVHPTVHEIDKDPECREIEKALMRLGCSTPVPAIFVGGKLIGSTNEVMSLHLSGSLVPLVKPFQ 98          
BLAST of CK938056 vs. ExPASy Swiss-Prot
Match: GRS11_ARATH (Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana GN=GRXS11 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.909e-36
Identity = 70/97 (72.16%), Postives = 88/97 (90.72%), Query Frame = 1
Query:  217 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGYNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLKPY 507
            MDKV R++SEKGVVIF+KSSCCL YAV +LFQ+LGV+P ++EID+DPE +E+EKALMR+G + PVPAVFI G+LVGSTNEVMS+HLS +L+PL+KPY
Sbjct:    1 MDKVMRMSSEKGVVIFTKSSCCLSYAVQVLFQDLGVNPKIHEIDKDPECREIEKALMRLGCSKPVPAVFIGGKLVGSTNEVMSMHLSSSLVPLVKPY 97          
BLAST of CK938056 vs. ExPASy Swiss-Prot
Match: GRC14_ARATH (Glutaredoxin-C14 OS=Arabidopsis thaliana GN=GRXC14 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.094e-35
Identity = 70/100 (70.00%), Postives = 88/100 (88.00%), Query Frame = 1
Query:  217 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGYNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLKPYQPF 516
            MDKV R++SEKGVVIF+KSSCCLCYAV ILF++L V P ++EID DP+ +E+EKAL+R+G    VPAVF+SG+LVGSTN+VMSLHLSG+L+PL+KPYQ F
Sbjct:    1 MDKVMRMSSEKGVVIFTKSSCCLCYAVQILFRDLRVQPTIHEIDNDPDCREIEKALVRLGCANAVPAVFVSGKLVGSTNDVMSLHLSGSLVPLIKPYQSF 100          
BLAST of CK938056 vs. ExPASy Swiss-Prot
Match: GRC13_ARATH (Glutaredoxin-C13 OS=Arabidopsis thaliana GN=GRXC13 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.094e-35
Identity = 69/98 (70.41%), Postives = 87/98 (88.78%), Query Frame = 1
Query:  217 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGYNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLKPYQ 510
            MDKV R++SEKGVVIF+KSSCCLCYAV ILF++L V P ++EID DP+ +E+EKAL+R+G +  VPAVF+ G+LVGSTNEVMSLHLSG+L+PL+KPYQ
Sbjct:    1 MDKVMRMSSEKGVVIFTKSSCCLCYAVQILFRDLRVQPTIHEIDNDPDCREIEKALLRLGCSTAVPAVFVGGKLVGSTNEVMSLHLSGSLVPLIKPYQ 98          
BLAST of CK938056 vs. ExPASy Swiss-Prot
Match: GRXC1_ORYSJ (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN=GRXC1.1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.171e-29
Identity = 64/96 (66.67%), Postives = 80/96 (83.33%), Query Frame = 1
Query:  217 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMR-MGYNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLK 501
            MD+V RLA+++ VVIFS SSCC+C+ V  LF ELGV+P V E+D+DP GKEMEKAL R +G +  VPAVFI G+LVGST++VMSLHLSGNL+PLL+
Sbjct:    1 MDRVNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLLGRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLR 96          
BLAST of CK938056 vs. ExPASy Swiss-Prot
Match: GRC14_ORYSJ (Putative glutaredoxin-C14 OS=Oryza sativa subsp. japonica GN=GRXC14 PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.884e-28
Identity = 59/96 (61.46%), Postives = 78/96 (81.25%), Query Frame = 1
Query:  217 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMR-MGYNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLK 501
            MD+V +LASE+ VVIF+ SSCC+C+ V  LF +LGV+ +V+E+DQDP GKEME+AL++ +G   PVP VFI G+LVG TN++MSLHL G LIP+LK
Sbjct:    1 MDRVMKLASERAVVIFTLSSCCMCHTVTRLFCDLGVNALVHELDQDPRGKEMERALLKLLGRGPPVPVVFIGGKLVGGTNKIMSLHLGGELIPMLK 96          
BLAST of CK938056 vs. ExPASy Swiss-Prot
Match: GRXS7_ARATH (Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana GN=GRXS7 PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.481e-24
Identity = 51/95 (53.68%), Postives = 74/95 (77.89%), Query Frame = 1
Query:  217 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGYNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLK 501
            M+K+ ++ SEK +VIFSK+SCC+ + +  LF +LGV+P +YE+D+   GKE+E+AL ++G +  VP VFI GQLVG  N+VMSLHL+ +LIP+LK
Sbjct:    1 MEKLQKMTSEKSLVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLK 95          
BLAST of CK938056 vs. ExPASy Swiss-Prot
Match: GRXS4_ARATH (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.481e-24
Identity = 51/95 (53.68%), Postives = 73/95 (76.84%), Query Frame = 1
Query:  217 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGYNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLK 501
            MDK+ ++ SEK VVIFSK+SCC+ + +  LF + GV+P +YE+D+   GKE+E+AL ++G +  VP VFI GQLVG  N+VMSLHL+ +L+P+LK
Sbjct:    1 MDKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLK 95          
BLAST of CK938056 vs. ExPASy Swiss-Prot
Match: GRXS2_ARATH (Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.527e-24
Identity = 50/95 (52.63%), Postives = 72/95 (75.79%), Query Frame = 1
Query:  217 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGYNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLK 501
            MD +T++  E+ VVI+SKSSCC+ + +  L  + G +P VYE+D+   G+E+E+AL+R+G +  VP VFI G+LVG  NEVMSLHL+G+LIP+LK
Sbjct:    1 MDMITKMVMERPVVIYSKSSCCMSHTIKTLLCDFGANPAVYELDEISRGREIEQALLRLGCSPAVPGVFIGGELVGGANEVMSLHLNGSLIPMLK 95          
BLAST of CK938056 vs. ExPASy Swiss-Prot
Match: GRXS8_ARATH (Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.300e-24
Identity = 51/97 (52.58%), Postives = 73/97 (75.26%), Query Frame = 1
Query:  217 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGYNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLKPY 507
            M+K+ ++ SEK VVIFS +SCC+ + +  LF +LGV+P +YE+D+   GKE+E AL ++G +  VP VFI GQLVG  N+VMSLHL+ +LIP+LK +
Sbjct:    1 MEKIQKMISEKSVVIFSNNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEYALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRF 97          
The following BLAST results are available for this feature:
BLAST of CK938056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
GRXS9_ARATH5.245e-3872.45Monothiol glutaredoxin-S9 OS=Arabidopsis thaliana ... [more]
GRS11_ARATH4.909e-3672.16Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana... [more]
GRC14_ARATH1.094e-3570.00Glutaredoxin-C14 OS=Arabidopsis thaliana GN=GRXC14... [more]
GRC13_ARATH1.094e-3570.41Glutaredoxin-C13 OS=Arabidopsis thaliana GN=GRXC13... [more]
GRXC1_ORYSJ1.171e-2966.67Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN... [more]
GRC14_ORYSJ2.884e-2861.46Putative glutaredoxin-C14 OS=Oryza sativa subsp. j... [more]
GRXS7_ARATH1.481e-2453.68Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana ... [more]
GRXS4_ARATH1.481e-2453.68Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana ... [more]
GRXS2_ARATH2.527e-2452.63Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana ... [more]
GRXS8_ARATH3.300e-2452.58Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004478_F11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0002_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938056 ID=CK938056; Name=CK938056; organism=Citrus sinensis; type=EST; length=743bp
GGGGAACCTTAAGCTTTAAATCCTTTTCTCCCTTGCTCACTTTTCCTTCT
CTCAAATCCTTCCTCACCATCACCACCCCGAATTCAACTAGAGTTCGGTT
TGATGGTATATAGGTTTTAAGTGAACTCTACGTAACCCGAGGACTTCTCT
GTGTTTAACATTTCCCGTCCCGTGATACTTCAATCTTTAAGTAAGGGAGA
AGCCACTCTTATCGTCATGGACAAGGTGACAAGGTTGGCCTCAGAGAAAG
GAGTAGTAATATTCAGCAAGAGCTCGTGTTGCCTCTGCTATGCAGTCAAC
ATTCTATTTCAGGAACTTGGTGTCCACCCTATGGTTTATGAGATTGACCA
AGATCCTGAAGGCAAGGAAATGGAGAAAGCTCTGATGAGGATGGGTTATA
ACGCGCCCGTTCCAGCAGTGTTCATTTCTGGACAGCTTGTGGGATCCACC
AATGAAGTCATGTCTCTCCATCTAAGTGGCAATCTGATTCCGCTGCTGAA
GCCTTACCAGCCCTTCTCTTAATCTAAACTACTCTGAATGTCACAATCTC
ATTGGCGAATAAATTCGGCACCAATTAGTAGTTGTAGTGTGCTCAGTGAT
GTGTAGCAGTCTATATAGCTGGTTGTGTTTCGAGTACTTCATAGCTTTGA
ATTAGCTATAACATGTGTTTGTAATGTGCTTCCTTTTATTAATGAAAGTA
GCTTTATATACTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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