CK938048

Overview
NameCK938048
Unique NameCK938048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938048_ssr566 microsatellite CK938048_ssr566:566..575. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2077 contig Csv1_Contig2077:1..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938048 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.580e-62
Identity = 121/160 (75.62%), Postives = 135/160 (84.38%), Query Frame = 3
Query:   78 MDFRIMGLDSSPLFSTLQHMMEMGADDSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVGAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 557
            MDFR+MGL+S PLF TLQHMM+M  D + DNK+ NAPT +YVRDAKAMAATPADVKEYPNSYVF +DMPGLKSGDIKVQVEDDN+LLI GERKR+EEK+GAKY+RMERRVGK MRKFVLPENAN  AISAVCQDGVL+VTV            TI+VK+A
Sbjct:    1 MDFRVMGLES-PLFHTLQHMMDMSEDGAGDNKTHNAPTWSYVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVTVQKLPPPEPKKPRTIQVKVA 159          
BLAST of CK938048 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 6.640e-61
Identity = 118/160 (73.75%), Postives = 132/160 (82.50%), Query Frame = 3
Query:   78 MDFRIMGLDSSPLFSTLQHMMEMGADDSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVGAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 557
            MD R++G+D++PLF TL HMME   +DS      NAP++ YVRDAKAMAATPADVKEYPNSYVF+VDMPGLKSGDIKVQVE+DNVLLISGERKREEEK+GAK++RMERRVGKFMRKF LPENAN  AISAVCQDGVLTVTV            TIEVK+A
Sbjct:    1 MDLRLLGIDNTPLFHTLHHMMEAAGEDSV-----NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVTVQKLPPPEPKKPKTIEVKVA 155          
BLAST of CK938048 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.871e-55
Identity = 111/155 (71.61%), Postives = 129/155 (83.23%), Query Frame = 3
Query:   93 MGLDSSPLFSTLQHMMEMGADDSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVGAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 557
            M LDS PLF+TL H+M++   D    K+ NAPTRTYVRDAKAMAATPADVKE+PNSYVF+VDMPG+KSGDIKVQVED+NVLLISGERKREEEK+G KY++MERR+GK MRKFVLPENAN+ AISA+ QDGVLTVTV+           TI+VK+A
Sbjct:    1 MDLDS-PLFNTLHHIMDL--TDDTTEKNLNAPTRTYVRDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVTVNKLPPPEPKKPKTIQVKVA 152          
BLAST of CK938048 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.692e-53
Identity = 113/160 (70.62%), Postives = 126/160 (78.75%), Query Frame = 3
Query:   78 MDFRIMGLDSSPLFSTLQHMMEMGADDSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKRE-EEKDGAKYVRMERRVGKFMRKFVLPENANVGAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKI 554
            MD R+MG D  PLF    H+M+   DD + N  S+AP+RT++ DAKAMAATPADVKEYPNSYVFI+DMPGLKSGDIKVQV+ DNVL ISGERKRE EEK+GAKYVRMERRVGK MRKFVLPENAN   I+AVCQDGVLTVTV+           TIEVKI
Sbjct:    1 MDLRLMGFDH-PLF---HHIMDYAGDDKSSN--SSAPSRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVTVENVPPPEPKKPRTIEVKI 154          
BLAST of CK938048 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.062e-50
Identity = 103/157 (65.61%), Postives = 124/157 (78.98%), Query Frame = 3
Query:   90 IMGLDSSPLFSTLQHMMEMGADDSADNKSSNA-PTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVGAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 557
            +MG D  PL   L +++E   D++  NKS+N+ P+R YVRDA+AMAATPADVKE PNSYVFIVDMPGLKSGDIKVQVE DNVL+ISG+R REEEK+G KYVRMERR+GKFM+KF LPE+AN   ISA+CQDGVLTVTV+           TI+V++A
Sbjct:    6 LMGFD--PLLRNLHYILEATDDNTTGNKSNNSGPSRAYVRDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVTVEKLPPPEPKKPKTIQVQVA 160          
BLAST of CK938048 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.935e-48
Identity = 104/167 (62.28%), Postives = 121/167 (72.46%), Query Frame = 3
Query:   78 MDFRIMGLDS----SPLFSTLQHMMEMGAD-DSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGER--KREEEKDGAKYVRMERRVGKFMRKFVLPENANVGAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 557
            MD R  GL +      L ST+Q M++   D D A       P R YVRDAKAMAATPADVKEYPNSYVFI DMPG+K+ +IKVQVEDDNVL++SGER  + ++EKDG KY+RMERRVGKFMRKFVLPENANV AI+AV QDGVL VTV+           T+EVK+A
Sbjct:    1 MDLRNFGLSNFGLEPQLLSTIQDMLDFADDHDRAGRAPPEQPIRAYVRDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVTVEKLPPPEPKKPKTVEVKVA 167          
BLAST of CK938048 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.436e-47
Identity = 98/165 (59.39%), Postives = 127/165 (76.97%), Query Frame = 3
Query:   78 MDFRIMGLDSSPLFSTLQHMMEMGADDSA---DNK--SSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVGAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 557
            MD  + GL++ PL + LQH++++   D+    DNK  S  + TRTYVRDA+AMAATPADVKE P +Y F+VDMPGL +GDI+VQVED+ VL++SGER+REE +D AKY+RMERR+GKFMRKFVLP+NA+V  ++AVC+DGVLTVTV+           TIEVK+A
Sbjct:    1 MDAVMFGLET-PLMAALQHLLDVPDGDAGAGGDNKTGSGGSATRTYVRDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 164          
BLAST of CK938048 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.216e-46
Identity = 98/163 (60.12%), Postives = 122/163 (74.85%), Query Frame = 3
Query:   78 MDFRIMGLDSSPLFSTLQHMMEMGADDSA---DNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVGAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 557
            MD R+ GL++ PL   LQH++++   D+    D      PTRTYV DA+AMA TPADVKE P +Y F+VDMPGL +GDIKVQVED+ VL+ISGER+REE +D AKY+RMERR+GKFMRKFVLP+NA++  ISAVC+DGVLTVTV+           TIEVK+A
Sbjct:    1 MDGRMFGLET-PLMVALQHLLDVPDGDAGAGGDKAGGGGPTRTYVADARAMAVTPADVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERED-AKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 161          
BLAST of CK938048 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.486e-44
Identity = 93/160 (58.13%), Postives = 121/160 (75.62%), Query Frame = 3
Query:   78 MDFRIMGLDSSPLFSTLQHMMEMGADDSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVGAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 557
            MD R+ GL++ P  + L H++++   D    K+    TRTYVRDA+AMAATPADVKE   +Y F+VDMPGL +GDI+VQVED+ VL+ISGER+REE +D AKY+RMERR+GKFMRKFVLP+NA+V  ++AVC+DGVLTVTV+           TIE+K+A
Sbjct:    1 MDARMFGLET-PRVAALHHLLDVPDGD----KAGGGATRTYVRDARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREERED-AKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEIKVA 154          
BLAST of CK938048 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.486e-44
Identity = 95/167 (56.89%), Postives = 126/167 (75.45%), Query Frame = 3
Query:   78 MDFRIMGLDSSPLFSTLQHMMEM--GADDSADNK-SSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKR----EEEKDGAKYVRMERRVGKFMRKFVLPENANVGAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 557
            M+  + GL++ PL + LQH++++  G   +A  + ++  PTR YVRDA+AMAATPADVK+ P +Y F+VDMPGLKS DIKVQVE++ +L+ISGER+R    EE+++  KY+RMERR+GKFMRKFVLP+NA+V  ISAVCQDGVLTVTV+           TIEVK+A
Sbjct:    1 MESAMFGLET-PLMTALQHLLDIPDGEGGAAGKQGATGGPTRAYVRDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEVKVA 166          
The following BLAST results are available for this feature:
BLAST of CK938048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP21_SOYBN1.580e-6275.6317.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_SOLPE6.640e-6173.7517.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_PEA1.871e-5571.6117.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_IPONI8.692e-5370.6317.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_HELAN1.062e-5065.6117.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP22_IPONI4.935e-4862.2818.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP22_MAIZE1.436e-4759.3917.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_MAIZE1.216e-4660.1217.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP23_MAIZE1.486e-4458.1317.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP18_ORYSJ1.486e-4456.8918.0 kDa class II heat shock protein OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004478_H01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0002_IVF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938048 ID=CK938048; Name=CK938048; organism=Citrus sinensis; type=EST; length=811bp
GCGGGGAACCAACAAAAGACGAACGAATCCTCNNNTGGCAGTAGCAAACA
TCAACAACAGCTAATACTCGCAAAAGAATGGATTTCAGAATCATGGGTTT
GGACTCATCGCCACTCTTTTCAACTCTGCAGCACATGATGGAGATGGGGG
CGGACGACTCCGCTGACAACAAGTCATCCAACGCGCCGACGCGCACGTAC
GTGAGAGACGCCAAGGCAATGGCGGCGACGCCTGCGGACGTGAAGGAGTA
TCCGAACTCGTACGTGTTCATCGTCGATATGCCCGGACTGAAGTCGGGGG
ACATCAAGGTCCAAGTGGAGGACGACAATGTGCTGCTCATAAGCGGTGAG
AGGAAGCGGGAGGAGGAGAAAGATGGGGCCAAGTATGTGAGAATGGAGAG
GAGGGTTGGCAAGTTTATGAGGAAATTTGTGCTGCCTGAGAATGCTAACG
TTGGAGCCATTTCGGCGGTGTGTCAGGACGGAGTGTTGACTGTGACTGTC
GATAAGCTGCCACCGCCGGAGCCCAAGAAGCCCAAGACCATTGAGGTTAA
GATTGCTTGAACTTTGAGAGAGAGAATATGCTGGATTGTGGGTGCTGATG
TCTTTTCTATTTGCCGGTTGTTATGAATAATTTTGCTTGTGGGTTTGACG
GTACTATGCCTCTGTAATCTCCTCTTCCTTTTTCTTTTTTTCTCTTTCTT
CCCTTTTTTGTCCAAAATTCTCTCTGTTCACTGGTTTGTGGTTCGGTCTT
TGGCATTCCGGAGGGGAAGCTGACGGCCGTCTACTGGTAGACATCTAGTT
GTTATAATTAA
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