CX675419

Overview
NameCX675419
Unique NameCX675419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675419 vs. ExPASy Swiss-Prot
Match: OTU6B_DANRE (OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.631e-26
Identity = 64/150 (42.67%), Postives = 84/150 (56.00%), Query Frame = -3
Query:  123 VNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXSIILSYHRHAFGLGEHYNSVIPI 572
            + +I  DGHC+YRAVE QL            ++LR   A YMR H+ DF+PF  + N     +A    E FE YC +V  TAAWGG+LEL+AL+  L+  I +     P + +G+EY           I L Y RHA+GLGEHYNSV P+
Sbjct:  149 IKEISSDGHCMYRAVEHQLTERG---LALGLKELRDQTAQYMRSHADDFMPFLTNPNTGDMYTA----EEFEKYCSDVADTAAWGGQLELKALSQVLQLPIEVIQADSPCITIGEEY-------DKPKITLIYMRHAYGLGEHYNSVEPL 284          
BLAST of CX675419 vs. ExPASy Swiss-Prot
Match: OTU6B_CHICK (OTU domain-containing protein 6B OS=Gallus gallus GN=OTUD6B PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.354e-26
Identity = 68/170 (40.00%), Postives = 91/170 (53.53%), Query Frame = -3
Query:  132 NIVSDRTVEDXXXXXXXXXXXLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXSIILSYHRHAFGLGEHYNSV 641
            N+   R +E            L +  I  DGHC+YRA+EDQL       + +    LR   A Y+  H  DFLPF  + N  G+  ++   E FE YC ++ +TAAWGG+LELRAL+H L+  I +     P + +G+EY           IIL Y RHA+GLGEHYNSV
Sbjct:  135 NLTGARHLESQKLASLLAARHLEIKQIPSDGHCMYRAIEDQL---KDHHNSWTVATLRNQTAKYIHSHFDDFLPFLTNPNT-GDMYSK---EEFEKYCDDIANTAAWGGQLELRALSHILQTPIEVVQMDSPSIIVGEEY-------SGKPIILVYMRHAYGLGEHYNSV 290          
BLAST of CX675419 vs. ExPASy Swiss-Prot
Match: OTU6B_HUMAN (OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.795e-25
Identity = 66/170 (38.82%), Postives = 88/170 (51.76%), Query Frame = -3
Query:  132 NIVSDRTVEDXXXXXXXXXXXLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXSIILSYHRHAFGLGEHYNSV 641
            N+   R +E            L +  I  DGHC+Y+A+EDQL       +      LR   A YM+ H  DFLPF  + N           E F+ YC+++ +TAAWGG+LELRAL+H L+  I I     P + +G+EY           +IL Y RHA+GLGEHYNSV
Sbjct:  126 NLTGARHMESEKLAQILAARQLEIKQIPSDGHCMYKAIEDQLKEKDCALTVV---ALRSQTAEYMQSHVEDFLPFLTNPNT----GDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIVGEEY-------SKKPLILVYMRHAYGLGEHYNSV 281          
BLAST of CX675419 vs. ExPASy Swiss-Prot
Match: OTU6B_XENTR (OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.035e-24
Identity = 66/171 (38.60%), Postives = 91/171 (53.22%), Query Frame = -3
Query:  132 SNIVSDRTVEDXXXXXXXXXXXLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXSIILSYHRHAFGLGEHYNSV 644
            +N+   R +E            L +  I  DGHC+YRA+E QL       +  N   LR   A YM++H+ DFLPF L+ +  G+   Q   E F  YC ++ +T AWGG+LELRAL+H L+  I +       + +G+EY          +I L Y RHA+GLGEHYNSV
Sbjct:  128 ANLSGARHLESQKLARILAERELQIRQIPSDGHCMYRAIEHQLRERGNDLTVAN---LRSQTADYMQNHAEDFLPF-LTNSSTGDMYTQ---EEFLKYCTDIVNTPAWGGQLELRALSHILKTAIEVIQAESSPIVIGEEY-------SSKAITLVYMRHAYGLGEHYNSV 284          
BLAST of CX675419 vs. ExPASy Swiss-Prot
Match: OTU6B_MOUSE (OTU domain-containing protein 6B OS=Mus musculus GN=Otud6b PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.035e-24
Identity = 63/147 (42.86%), Postives = 83/147 (56.46%), Query Frame = -3
Query:  132 VNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXSIILSYHRHAFGLGEHYNSV 572
            +  I  DGHC+Y A+EDQL       +      LR+  A YM+ HS DFLPF L+    G+       E F  YC ++ +TAAWGG+LELRAL+H L+  I I     P + +G+EY           ++L Y RHA+GLGEHYNSV
Sbjct:  150 IKQIPSDGHCMYGALEDQLREQDCALT---VASLRRQTAEYMQTHSDDFLPF-LTNPSTGDMYTP---EEFGKYCDDIVNTAAWGGQLELRALSHILQTPIEILQADAPPIIVGEEY-------PRNPLVLVYMRHAYGLGEHYNSV 282          
BLAST of CX675419 vs. ExPASy Swiss-Prot
Match: OTU6B_XENLA (OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.616e-23
Identity = 65/171 (38.01%), Postives = 89/171 (52.05%), Query Frame = -3
Query:  132 SNIVSDRTVEDXXXXXXXXXXXLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXSIILSYHRHAFGLGEHYNSV 644
            +N+   R +E            L +  I  DGHC+YRA+E QL       +  N   LR   A YM+  + DFLPF L+ +  G+   Q   E F+ YC ++ +T AWGG+LELRAL+H L+  I +       + +G+EY           I L Y RHA+GLGEHYNSV
Sbjct:  128 ANLSGARHLESQKLAQILAERELQIRQIPSDGHCMYRAIEHQLNEQGNSLTVAN---LRSQTADYMQKRAEDFLPF-LTNSSTGDMYTQ---EEFQKYCTDIVNTPAWGGQLELRALSHILKTPIEVIQAESLPIVIGEEY-------SNKPITLVYMRHAYGLGEHYNSV 284          
BLAST of CX675419 vs. ExPASy Swiss-Prot
Match: OTU6A_HUMAN (OTU domain-containing protein 6A OS=Homo sapiens GN=OTUD6A PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.892e-22
Identity = 59/147 (40.14%), Postives = 81/147 (55.10%), Query Frame = -3
Query:  123 IKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXSIILSYHRHAFGLGEHYNSVIPI 563
            I  DGHC+YRA++DQL          + + LR   A+YM+ H  +FLPF+ +     E S     + F  YC  +  T AWGG+LELRAL+H L+  I +     P + +G+EY           IIL Y R+A+ LGEHYNSV P+
Sbjct:  146 IPADGHCMYRAIQDQLVF------SVSVEMLRCRTASYMKKHVDEFLPFFSNP----ETSDSFGYDDFMIYCDNIVRTTAWGGQLELRALSHVLKTPIEVIQADSPTLIIGEEY-------VKKPIILVYLRYAYSLGEHYNSVTPL 275          
BLAST of CX675419 vs. ExPASy Swiss-Prot
Match: OTU6A_MOUSE (OTU domain-containing protein 6A OS=Mus musculus GN=Otud6a PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.072e-20
Identity = 58/147 (39.46%), Postives = 78/147 (53.06%), Query Frame = -3
Query:  123 IKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXSIILSYHRHAFGLGEHYNSVIPI 563
            I  DGHC+YRA++DQL            + LR   A YMR H  DFLPF+ +E   G    +   E F  YC ++   A+WGG+LELRAL+H L+  I +   + P + +G+EY           + L Y  +A   GEHYNSV PI
Sbjct:  147 IPADGHCMYRAIQDQLVF------SVTIESLRYRTAYYMRKHIDDFLPFF-TEPEAGNFYTR---EDFLRYCDDIVHNASWGGQLELRALSHVLQTPIEVVQANSPTIVIGEEY-------TRKPVTLVYLHYACDFGEHYNSVKPI 276          
BLAST of CX675419 vs. ExPASy Swiss-Prot
Match: OTU2_YEAST (OTU domain-containing protein 2 OS=Saccharomyces cerevisiae GN=OTU2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.628e-15
Identity = 46/148 (31.08%), Postives = 75/148 (50.68%), Query Frame = -3
Query:  132 DIKPDGHCLYRAVEDQLAHLSGGAS---PYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXSIILSYHRHAFGLGEHYNSV 566
            DI+PDGHCL+ ++ DQL             +  +LR +   Y+++H  DF+P+   E  +       +++  + Y KE+E TA WGGE+E+ AL+H     I I       +  G+             + L Y++H++ LGEHYNS+
Sbjct:  171 DIQPDGHCLFASILDQLKLRHDPKKLDQDMDVMKLRWLSCNYVQEHRDDFIPYLFDEETM-------KMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISI-------LMSGRPIQVYNECGKNPELKLVYYKHSYALGEHYNSL 304          
BLAST of CX675419 vs. ExPASy Swiss-Prot
Match: YLO3_SCHPO (OTU domain-containing protein C1952.03 OS=Schizosaccharomyces pombe GN=SPAC1952.03 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.044e-12
Identity = 41/146 (28.08%), Postives = 69/146 (47.26%), Query Frame = -3
Query:  129 DIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXSIILSYHRHAFGLGEHYNSVI 566
            DI  DG+CL+ ++  QL +        N Q LR   A Y+  H   F  F L E          +V    +YC E+ + + WG ++E++AL + L   + +Y+   P ++                + ++Y++H FGLG HYNS++
Sbjct:  189 DIPADGNCLFASISHQLNYHHN--VKLNSQALRNKSADYVLKHCEQFEGFLLDEE-------SGEVLPVSDYCNEIRNNSKWGSDIEIQALANSLEVPVHVYNTEGPVLKFNPS-----TVKFEKPLCIAYYQHLFGLGAHYNSLL 320          
The following BLAST results are available for this feature:
BLAST of CX675419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
OTU6B_DANRE5.631e-2642.67OTU domain-containing protein 6B OS=Danio rerio GN... [more]
OTU6B_CHICK7.354e-2640.00OTU domain-containing protein 6B OS=Gallus gallus ... [more]
OTU6B_HUMAN2.795e-2538.82OTU domain-containing protein 6B OS=Homo sapiens G... [more]
OTU6B_XENTR4.035e-2438.60OTU domain-containing protein 6B OS=Xenopus tropic... [more]
OTU6B_MOUSE4.035e-2442.86OTU domain-containing protein 6B OS=Mus musculus G... [more]
OTU6B_XENLA2.616e-2338.01OTU domain-containing protein 6B OS=Xenopus laevis... [more]
OTU6A_HUMAN2.892e-2240.14OTU domain-containing protein 6A OS=Homo sapiens G... [more]
OTU6A_MOUSE2.072e-2039.46OTU domain-containing protein 6A OS=Mus musculus G... [more]
OTU2_YEAST7.628e-1531.08OTU domain-containing protein 2 OS=Saccharomyces c... [more]
YLO3_SCHPO6.044e-1228.08OTU domain-containing protein C1952.03 OS=Schizosa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_62B04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B04-D8-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675419 ID=CX675419; Name=CX675419; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTCCTAAAACTTATGATTTAATTTAGGAACCATGTTCTTTCAAA
CCACTAATGAAGAAAAAGAGAATGTGCACATAAAAGCAGCTTTCCATAAT
GTTGCAACAATACCTCTGGTCAAATTGGGATGACGGAATTATAGTGCTCG
CCAAGACCAAATGCATGTCTATGGTATGACAGTATAATACTTGAACCAGA
CGAATCAGACCCACCATTGGAATACTCCTTTCCCATTTCCACATCAGGGA
AGGATCCTGAATATATCATGATATGCTTTCTCAGGCAATGAGTTAAGGCT
CTTAGTTCAAGCTCCCCTCCCCAAGCTGCGGTTGACTCAACTTCTTTACA
GTAGTTCTCAAATCTCTCTACTTGTGATTGAGCAGACTCTTCACCTATCA
TATTTTCAGAAAGATAAAAAGGTAGGAAATCAGATGAATGATCTCTCATA
TAGGCAGCCACCATTTGTCGAAGCTGTTGGAAATTATAAGGAGAAGCACC
TCCTGACAGGTGAGCCAGCTGATCCTCAACAGCTCTATAGAGGCAGTGCC
CATCTGGCTTAATGTCATTAACAGTCAATCCCAGGGGTCCAAGCTTTTTC
TCCAATTTCTCATCTTCCACTGTTCGGTCACTGACAATGTTGCTCTGCTC
TTCTTGAATTCTCTGCTCCCTTGCTGCTTCCTGTTGAGCTCTTTTCTCTC
GCCTCTTTGTACCCTTGCTTGGCTTAGCCTGGTCATGTTGGCTGATGACT
GTAACCCCAGCTACTGCCTTCACCAAATTGTCAAGATTGCTTTTCTCATT
TCCATTACTACTGCTATAGCCTAATGAAGCAAGTTCTTTAGCAT
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