CX675416

Overview
NameCX675416
Unique NameCX675416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10991 contig Csv1_Contig10991:648..1221. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 364.385 bits (934), Expect = 2.257e-100
Identity = 175/190 (92.11%), Postives = 180/190 (94.74%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TLLPE+NQDENA+EKE       RF VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQEL AKDLH NEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHA+STGTMFTVYYKPRTSPSEFIVP+DQYMES
Sbjct:  134 ITLLPEANQDENAIEKEAPLPPPPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMES 323          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 332.413 bits (851), Expect = 9.503e-91
Identity = 166/195 (85.13%), Postives = 175/195 (89.74%), Query Frame = 3
Query:    3 VTLLPESNQDEN--AVEKEXXXXXXX---RFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TLLPES Q E+  + E+E          R  VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQEL AKDLHG EWRFRHIFRGQPRRHLLQSGWSVFVS+KRLVAGDAFIFLRGENGELRVGVRRAMRQQ NVPSSVISSHSMHLGVLATAWHAV+TGTMFTVYYKPRTSP+EF+VPYD+YMES
Sbjct:  114 LTLLPESKQQEDNGSTEEEVPSAPAAGHVRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQTNVPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTSPAEFVVPYDRYMES 308          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 4.716e-90
Identity = 165/195 (84.62%), Postives = 174/195 (89.23%), Query Frame = 3
Query:    3 VTLLPESNQDEN--AVEKEXXXXXXX---RFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TLLPE  Q E+  + E+E          R  VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQEL AKDLHG EWRFRHIFRGQPRRHLLQSGWSVFVS+KRLVAGDAFIFLRGENGELRVGVRRAMRQQ NVPSSVISSHSMHLGVLATAWHAV+TGTMFTVYYKPRTSP+EF+VPYD+YMES
Sbjct:  114 LTLLPELKQQEDNGSTEEEVPSAPAAGHVRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQTNVPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTSPAEFVVPYDRYMES 308          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.284e-87
Identity = 163/202 (80.69%), Postives = 170/202 (84.16%), Query Frame = 3
Query:    3 VTLLPESNQDENA----------VEKEXXXXXXX--RFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TLLPE  QD N           VE+E         R  VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMS+ PPTQEL AKDLHG EWRFRHIFRGQPRRHLLQSGWSVFVS+KRLVAGDAFIFLRGENGELRVGVRRAMRQQ N+PSSVISSHSMHLGVLATAWHAV+TGTMFTVYYKPRTSPSEF+VP D Y ES
Sbjct:  106 LTLLPEKQQDGNGSGNGNVSKDKVEEEEVVPPAATERPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQHPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQANIPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTSPSEFVVPRDLYKES 307          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 3.163e-86
Identity = 157/192 (81.77%), Postives = 167/192 (86.98%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFH--VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            V L+PE  Q+E AVEK        +    V SFCKTLTASDTSTHGGFSVLRRHADECLPPLDM++ PPTQEL AKDLH  +WRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQ  NVPSSVISS SMHLGVLATAWHA++T +MFTVYYKPRTSPSEFI+PYDQYMES
Sbjct:   97 VMLMPEPEQNEMAVEKTTPTSGPVQARPPVRSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTQSPPTQELVAKDLHSMDWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQLSNVPSSVISSQSMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMES 288          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 2.428e-78
Identity = 142/190 (74.74%), Postives = 163/190 (85.79%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            + L PE++Q+E    K        + +VHSFCKTLTASDTSTHGGFSVLRRHA+ECLPPLDM++ PP QEL A+DLHGNEW FRHIFRGQPRRHLL +GWSVFVSSKRLVAGDAFIFLRGENGELRVGVRR MRQ  N+PSSVISSHSMHLGVLATA HA+STGT+F+V+YKPRTS SEF+V  ++Y+E+
Sbjct:   99 IMLQPEADQNELTSPKPEPHEPE-KCNVHSFCKTLTASDTSTHGGFSVLRRHAEECLPPLDMTQNPPWQELVARDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSQSEFVVSANKYLEA 287          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 2.684e-77
Identity = 141/190 (74.21%), Postives = 161/190 (84.74%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TLLPE +Q E     +       +  VHSFCKTLTASDTSTHGGFSVLRRHAD+CLPPLDMS+QPP QEL A DLH +EW FRHIFRGQPRRHLL +GWSVFVSSK+LVAGDAFIFLRGEN ELRVGVRR MRQQ N+PSSVISSHSMH+GVLATA HA++TGT+F+V+YKPRTS SEFIV  ++Y+E+
Sbjct:   95 ITLLPELDQSE-PTSPDAPVQEPEKCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEA 283          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 5.062e-76
Identity = 139/190 (73.16%), Postives = 158/190 (83.16%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            + L PE++Q E     +       +   HSFCKTLTASDTSTHGGFSVLRRHA+ECLP LDMS+ PP QEL AKDLHG EW FRHIFRGQPRRHLL +GWSVFVSSKRLVAGDAFIFLRGE+GELRVGVRR MRQ  N+PSSVISSHSMHLGVLATA HA+STGT+F+V+YKPRTS SEF+V  ++Y+E+
Sbjct:   97 IMLQPEADQSE-LTSLDPELQDLEKCTAHSFCKTLTASDTSTHGGFSVLRRHAEECLPQLDMSQNPPCQELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGESGELRVGVRRLMRQVNNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEA 285          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.577e-69
Identity = 127/190 (66.84%), Postives = 152/190 (80.00%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TL+P   + +  +  +       R  VHSF K LTASDTSTHGGFSVLR+HA ECLPPLDM++Q PTQEL A+D+HG +W+F+HIFRGQPRRHLL +GWS FV+SKRLVAGD F+FLRGENGELRVGVRRA  QQ ++PSSVISSHSMHLGVLATA HA  T TMF VYYKPRT  S+FI+  ++Y+E+
Sbjct:   86 ITLIPVGTEVDEPMSPDPSPPELQRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTKTMFIVYYKPRT--SQFIISLNKYLEA 273          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.382e-65
Identity = 126/190 (66.32%), Postives = 146/190 (76.84%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TL PE +Q E     +       +   HSF K LTASDTSTHGGFSVLR+HA ECLP LDM++  PTQEL  +DLHG EWRF+HIFRGQPRRHLL +GWS FVSSKRLVAGDAF+FLRGENG+LRVGVRR  R Q  +P+SVISS SMHLGVLATA HAV T T+F V+YKPR   S+FIV  ++YME+
Sbjct:   99 ITLQPEEDQSE-PTSLDPPIVGPTKQEFHSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDAFVFLRGENGDLRVGVRRLARHQSTMPTSVISSQSMHLGVLATASHAVRTTTIFVVFYKPRI--SQFIVGVNKYMEA 285          
The following BLAST results are available for this feature:
BLAST of CX675416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ARFB_ARATH2.257e-10092.11Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFW_ORYSJ9.503e-9185.13Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI4.716e-9084.62Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFX_ORYSJ1.284e-8780.69Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFD_ORYSJ3.163e-8681.77Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFG_ORYSJ2.428e-7874.74Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]
ARFA_ARATH2.684e-7774.21Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFI_ORYSJ5.062e-7673.16Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]
ARFI_ARATH1.577e-6966.84Auxin response factor 9 OS=Arabidopsis thaliana GN... [more]
ARFR_ARATH1.382e-6566.32Auxin response factor 18 OS=Arabidopsis thaliana G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_62B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B02-D4-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675416 ID=CX675416; Name=CX675416; organism=Citrus sinensis; type=EST; length=574bp
AAGTGACTTTACTTCCAGAGTCAAACCAAGATGAGAACGCGGTGGAGAAA
GAACCACCTCCACCCCCGCCACCAAGATTTCACGTGCATTCGTTTTGTAA
AACACTAACGGCATCGGATACAAGTACTCATGGTGGGTTTTCGGTACTGA
GACGGCATGCTGATGAGTGTCTTCCACCCTTGGACATGTCACGGCAGCCT
CCCACACAGGAGTTGGCTGCTAAGGATTTGCATGGAAATGAGTGGCGGTT
CCGGCATATTTTCAGGGGTCAACCACGTAGACACTTGCTTCAGAGTGGAT
GGAGTGTTTTTGTTAGCTCAAAAAGACTAGTTGCAGGGGATGCTTTTATA
TTTTTGAGGGGTGAGAATGGCGAACTTCGTGTTGGTGTAAGGCGAGCAAT
GAGGCAGCAGGGTAATGTTCCATCTTCAGTCATATCTAGTCACAGCATGC
ATCTCGGTGTCCTTGCCACTGCATGGCATGCTGTCTCCACAGGAACTATG
TTCACTGTCTATTACAAGCCAAGAACAAGCCCATCAGAGTTCATTGTTCC
GTATGATCAGTACATGGAATCCAT
back to top