CX675415

Overview
NameCX675415
Unique NameCX675415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11749 contig Csv1_Contig11749:1127..1890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675415 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.832e-31
Identity = 68/99 (68.69%), Postives = 79/99 (79.80%), Query Frame = -3
Query:  469 LIAELDQLFEFDGELMAHKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNGEGIDAKEVKQPL-PLASNAEN 762
            L+AELD+LFEF+GELMA KK+WLIVYTD+E DMMLVGDDPWQEFC MVRKIFIYTKEEV KMN  +LS + E+  + GEG DAK+ K    P  S+A N
Sbjct:  760 LVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNPGTLSCRSEEEAVVGEGSDAKDAKSASNPSLSSAGN 858          
BLAST of CX675415 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.842e-26
Identity = 58/98 (59.18%), Postives = 74/98 (75.51%), Query Frame = -3
Query:  469 LIAELDQLFEFDGELMAHKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNGEGIDAKEVKQPLPLASNAEN 762
            L AELD++FEFDGEL++  KNW IVYTD+EGDMMLVGDDPW+EFC +VRKI+IYTKEEV KMNS S + + +DS  N +G         LP+ + ++N
Sbjct:  719 LKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSKSNAPRKDDSSENEKG--------HLPMPNKSDN 808          
BLAST of CX675415 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.712e-26
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = -3
Query:  541 LIAELDQLFEFDGELMAHKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDS 762
            LIAELDQ+F+F+GEL +  KNW++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV KMN  +L+S+ EDS
Sbjct:  740 LIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNPGALNSRSEDS 813          
BLAST of CX675415 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.410e-25
Identity = 59/101 (58.42%), Postives = 75/101 (74.26%), Query Frame = -3
Query:  469 LIAELDQLFEFDGELMAHKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNG--EGIDAKEVKQPLPLAS-NAEN 762
            LIAELD +F+F+GEL   KK W++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV +MN  +L+S+ EDS  N    G   +E++  L  +S N+EN
Sbjct:  752 LIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSEN 852          
BLAST of CX675415 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.410e-25
Identity = 59/101 (58.42%), Postives = 75/101 (74.26%), Query Frame = -3
Query:  469 LIAELDQLFEFDGELMAHKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNG--EGIDAKEVKQPLPLAS-NAEN 762
            LIAELD +F+F+GEL   KK W++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV +MN  +L+S+ EDS  N    G   +E++  L  +S N+EN
Sbjct:  752 LIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSEN 852          
BLAST of CX675415 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 9.790e-19
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = -3
Query:  574 LIAELDQLFEFDGELMAHKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 762
            L  +L+++F+  GEL+   K W +VYTDDE DMM+VGDDPW EFCGMVRKIFIYT EEV K++
Sbjct:  569 LFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLS 631          
BLAST of CX675415 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.720e-18
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = -3
Query:  517 LIAELDQLFEFDGELMAHKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNS-VSLSSKGEDSPMNGEGID 762
            LI EL+++FE  G+L+A  K W++V+TDDEGDMML GDDPW EFC M +KIFIY+ +EV KM + + +SS  E+     E  +
Sbjct:  516 LIDELEEMFEIQGQLLARDK-WIVVFTDDEGDMMLAGDDPWNEFCKMAKKIFIYSSDEVKKMTTKLKISSSLENEEYGNESFE 597          
BLAST of CX675415 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.411e-17
Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = -3
Query:  562 LIAELDQLFEFDGELMAHKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSL 762
            LI EL+++FE +GEL + K  W IV+TDDEGD MLVGDDPW EFC M +K+FIY  +EV KM S SL
Sbjct:  538 LIKELEKMFEIEGEL-SPKDKWAIVFTDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSKSL 603          
BLAST of CX675415 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.197e-16
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = -3
Query:  469 LIAELDQLFEFDGELMAHKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNGEGIDAKEVKQPLPLASNAEN 762
            LI ++++LF+  GEL + +  W IV+TDDEGDMMLVGDDPW EFC MV++IFI++KEEV KM           +P N   +  +EV+  L   S  +N
Sbjct:  550 LIDDIEKLFDIKGELRS-RNQWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKM-----------TPGNQLRMLLREVETTLTTTSKTDN 635          
BLAST of CX675415 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.482e-16
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  499 LIAELDQLFEFDGELMAHKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNGEGIDAKEVKQ 762
            L  +L+++F+  GEL A  K W +VYTDDE DMMLVGDDPW EFC MV++I+IYT EE  ++   S        P+ G+ I     KQ
Sbjct:  575 LRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLTPKS------KLPIIGDAIKPNPNKQ 656          
The following BLAST results are available for this feature:
BLAST of CX675415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ARFB_ARATH3.832e-3168.69Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFD_ORYSJ2.842e-2659.18Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFX_ORYSJ3.712e-2671.62Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSJ1.410e-2558.42Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI1.410e-2558.42Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFA_ARATH9.790e-1963.49Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFR_ARATH3.720e-1851.81Auxin response factor 18 OS=Arabidopsis thaliana G... [more]
ARFK_ARATH2.411e-1762.69Auxin response factor 11 OS=Arabidopsis thaliana G... [more]
ARFI_ARATH1.197e-1646.94Auxin response factor 9 OS=Arabidopsis thaliana GN... [more]
ARFG_ORYSJ3.482e-1647.73Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62B02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675415 ID=CX675415; Name=CX675415; organism=Citrus sinensis; type=EST; length=764bp
TTTCACATAAACTAATAGATTCTACTATCTTGTGACTATTTTGCAAAGAC
TTACAAAGTCATTAGCCCTTACTACACCTGCTAAAAATCCTAGTGAATGG
AGATCCGCGAACAGAAAACCAACAAAACAAACATATGCTTGTAGGCTTTC
CCAAGAAGGCACCAGAGGATGTATAAAACTTAGGCTACTTACATTAAGAG
GTTGGAAAAGAGGGGTAAACAACTATGTACAAAAAGGGATCGTTCGGGAA
AGCAAAAGCTAGAATTGCCATGCTCAAAATAGGGGGTATACATATTGAAT
GTATTATATGAGTCGGACACAATATACCATGCCCCAAATTGGATAGTCAT
GCCGTCTACGAGGAGGATTGACATCCATCTATTAGTTCATAATCCAAAAT
AGAATGCCCTGAATATCTTCTTTCTGATGCTGCAACAAAACCTTGAACCA
TCAAAACCACACCTAAAAATTCTCTGCATTAGATGCTAAAGGAAGTGGCT
GTTTCACTTCTTTTGCATCAATGCCTTCCCCATTCATTGGACTATCCTCA
CCCTTCGAGCTTAAAGACACTGAGTTCATCTTCAGGACCTCCTCTTTTGT
GTAGATGAAAATTTTGCGTACCATACCACAAAACTCCTGCCATGGATCAT
CTCCNACAAGCATCATGTCACCCTCATCATCAGTATATACGATAAGCCAA
TTTTTCTTGTGAGCCATTAATTCACCATCAAATTCAAATAACTGATCCAG
TTCGGCAATCAATT
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