CK937998

Overview
NameCK937998
Unique NameCK937998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1521 contig Csv1_Contig1521:1..503. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK937998 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.052e-21
Identity = 53/109 (48.62%), Postives = 66/109 (60.55%), Query Frame = 3 
Query:   75 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTAYD 401
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPT YD
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYD 98

HSP 2 Score: 24.2534 bits (51), Expect = 2.052e-21
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 2 
Query:  488 LYSGETRSKH 517
            +YSGETRSKH
Sbjct:  100 MYSGETRSKH 109
The following BLAST results are available for this feature:
BLAST of CK937998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN2.052e-2148.62Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004479_E02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937998 ID=CK937998; Name=CK937998; organism=Citrus sinensis; type=EST; length=518bp
GTGCCCATTACGGCCGGGGCACTGAAGAAGAGGTTAAAGATTTAGAAACT
AGCAGCTAAATTGTAAATTTAAAGATGCTAGAGAAGCTTTGGGACGATGT
TGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGCAGGCTGAGGAAAATCA
CCACAACACCCTTAGCAGTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCG
GGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCAGGGGCACCGTC
GACGCCAGTGACGCCGACAACGCCGCTGTCGGCGCGTAAGGACAACGTGT
GGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTAGGGGTATCGGT
GCAGAGGTCTTTGACAAGCCCACACATCCTAACTCTCCCACTGCTTATGA
CTGCAACCAAATAAAGGCTAAGAGGAAGGAGGAAAACGTGGCACTCTGTC
TCATGGGCGCGTTGAAATAGATCTTTGTCTTATTCAGCTTTACAGTGGGG
AGACTAGGAGCAAGCATC
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