CX675409

Overview
NameCX675409
Unique NameCX675409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.156e-56
Identity = 106/224 (47.32%), Postives = 144/224 (64.29%), Query Frame = 1
Query:    1 LIHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGSIAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNE 672
            L+++DVCGP ++ S+G N YF+ FIDD  RK WVY LK K +V              +G  +K  RS+ GGE+TS+EF E+C ++GIR   TV  +PQ NGV ER NRTI    RSML+  +LPK FW EAV  A YL  RSPS  +  ++P+  W+ +++  +HL+VFG  A  HVP E R+KLDDKS   IFIGY +   GY+L++   ++++ SRDVVF E
Sbjct:  483 LVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRE 706          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 2.676e-39
Identity = 89/226 (39.38%), Postives = 127/226 (56.19%), Query Frame = 1
Query:    1 LIHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYLSYRSPSRSV--*GKMPQEAWSGRKLGITHLRVFGSIAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNE 672
            ++H+DVCGP    +L   NYF++F+D F      Y +K KS+V                  +     + G E+ S E  +FC   GI   LTV  +PQ NGV ER  RTI   AR+M+   +L K FW EAV  A YL  R PSR++    K P E W  +K  + HLRVFG+  +VH+ ++ + K DDKS K IF+GY+ N  G+KL+++ N + +++RDVV +E
Sbjct:  483 VVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNK-QGKFDDKSFKSIFVGYEPN--GFKLWDAVNEKFIVARDVVVDE 705          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YL21B_YEAST (Transposon Ty2-LR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-LR1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 64/244 (26.23%), Postives = 102/244 (41.80%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  R  WVY L  + E               + +  +    + +RG E+T+K   +F    GI    T     + +GV ER NRT+ N  R++L    LP   W  AV  +  +  S  SP      K  ++      L IT +  FG   I + H PD   SK+  +      +    NS GY +Y    ++ V + + V  ++ +    S +D F +
Sbjct:  664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDNQ----SKLDQFNY 897          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YD23B_YEAST (Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-DR3 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 64/244 (26.23%), Postives = 102/244 (41.80%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  R  WVY L  + E               + +  +    + +RG E+T+K   +F    GI    T     + +GV ER NRT+ N  R++L    LP   W  AV  +  +  S  SP      K  ++      L IT +  FG   I + H PD   SK+  +      +    NS GY +Y    ++ V + + V  ++ +    S +D F +
Sbjct:  664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDNQ----SKLDQFNY 897          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YB21B_YEAST (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-B PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 64/244 (26.23%), Postives = 102/244 (41.80%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  R  WVY L  + E               + +  +    + +RG E+T+K   +F    GI    T     + +GV ER NRT+ N  R++L    LP   W  AV  +  +  S  SP      K  ++      L IT +  FG   I + H PD   SK+  +      +    NS GY +Y    ++ V + + V  ++ +    S +D F +
Sbjct:  664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDNQ----SKLDQFNY 897          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YF21B_YEAST (Transposon Ty2-F/Ty2-GR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-F PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 64/244 (26.23%), Postives = 102/244 (41.80%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  R  WVY L  + E               + +  +    + +RG E+T+K   +F    GI    T     + +GV ER NRT+ N  R++L    LP   W  AV  +  +  S  SP      K  ++      L IT +  FG   I + H PD   SK+  +      +    NS GY +Y    ++ V + + V  ++ +    S +D F +
Sbjct:  664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDKQ----SKLDQFNY 897          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YD21B_YEAST (Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-DR1 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 64/244 (26.23%), Postives = 102/244 (41.80%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  R  WVY L  + E               + +  +    + +RG E+T+K   +F    GI    T     + +GV ER NRT+ N  R++L    LP   W  AV  +  +  S  SP      K  ++      L IT +  FG   I + H PD   SK+  +      +    NS GY +Y    ++ V + + V  ++ +    S +D F +
Sbjct:  664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDKQ----SKLDQFNY 897          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YC21B_YEAST (Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-C PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 64/244 (26.23%), Postives = 102/244 (41.80%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  R  WVY L  + E               + +  +    + +RG E+T+K   +F    GI    T     + +GV ER NRT+ N  R++L    LP   W  AV  +  +  S  SP      K  ++      L IT +  FG   I + H PD   SK+  +      +    NS GY +Y    ++ V + + V  ++ +    S +D F +
Sbjct:  664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDKQ----SKLDQFNY 897          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YO22B_YEAST (Transposon Ty2-OR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-OR2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 61/232 (26.29%), Postives = 96/232 (41.38%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGE 681
            +HTD+ GP         +YF+ F D+  R  WVY L  + E               + +  +    + +RG E+T+K   +F    GI    T     + +GV ER NRT+ N  R++L    LP   W  AV  +  +  S  SP      K  ++      L IT +  FG   I + H PD   SK+  +      +    NS GY +Y    ++ V + + V  +  +
Sbjct:  664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQNNQ 889          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YG21B_YEAST (Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-GR1 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 61/226 (26.99%), Postives = 95/226 (42.04%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVV 663
            +HTD+ GP         +YF+ F D+  R  WVY L  + E               + +  +    + +RG E+T+K   +F    GI    T     + +GV ER NRT+ N  R++L    LP   W  AV  +  +  S  SP +    K  ++      L IT +  FG   I + H PD   SK+  +      +    NS GY +Y    ++ V + + V
Sbjct:  664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKKR---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYV 883          
The following BLAST results are available for this feature:
BLAST of CX675409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
POLX_TOBAC9.156e-5647.32Retrovirus-related Pol polyprotein from transposon... [more]
COPIA_DROME2.676e-3939.38Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
YL21B_YEAST6.213e-1226.23Transposon Ty2-LR1 Gag-Pol polyprotein OS=Saccharo... [more]
YD23B_YEAST6.213e-1226.23Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharo... [more]
YB21B_YEAST6.213e-1226.23Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomy... [more]
YF21B_YEAST1.060e-1126.23Transposon Ty2-F/Ty2-GR2 Gag-Pol polyprotein OS=Sa... [more]
YD21B_YEAST1.060e-1126.23Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharo... [more]
YC21B_YEAST1.060e-1126.23Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomy... [more]
YO22B_YEAST1.808e-1126.29Transposon Ty2-OR2 Gag-Pol polyprotein OS=Saccharo... [more]
YG21B_YEAST1.808e-1126.99Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A11-B22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675409 ID=CX675409; Name=CX675409; organism=Citrus sinensis; type=EST; length=726bp
CTCATTCATACTGATGTGTGCGGTCCATTCAAGCTAAACTCCCTTGGTAA
AAATAATTATTTCCTTCTCTTCATAGATGATTTTTTAAGAAAAACTTGGG
TGTATTTTTTAAAGCAGAAATCAGAAGTCTTTGAAGCTTTCAAGAAGTTT
AAAGCTGCAATGGAAAAAGAAAGTGGATACCCAATTAAAGCCACAAGATC
TAATCGAGGTGGAGAGTTCACTTCCAAAGAATTTTTAGAGTTTTGTGAAG
CAAATGGAATTCGACGCCCTTTGACAGTTCTAAGATCCCCTCAGCAAAAT
GGTGTTGTAGAAAGGAAGAACAGAACCATCCGCAACATGGCAAGAAGCAT
GCTCAAGAGTAAGAGGCTACCTAAAGAATTTTGGGCTGAAGCTGTTGCAT
GTGCAGTCTACTTATCCTATCGATCTCCATCAAGAAGCGTGTGAGGCAAG
ATGCCACAAGAAGCTTGGAGTGGAAGAAAACTCGGCATCACCCATCTTAG
AGTTTTCGGAAGCATTGCCCATGTACATGTACCGGACGAGAGTAGAAGCA
AACTGGATGATAAAAGTGAGAAGTTCATCTTCATCGGCTATGACAACAAC
TCCAAAGGATACAAACTTTACAATTCAGACAACAGGAGGATCGTGATCAG
TCGAGATGTAGTTTTTAATGAAGAAGGAGAATGGGATTTTGGCTCTGGTA
TGGATGACTTCTACTTCTTTCCCATT
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