CX675409
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 9.156e-56 Identity = 106/224 (47.32%), Postives = 144/224 (64.29%), Query Frame = 1 Query: 1 LIHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGSIAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNE 672 L+++DVCGP ++ S+G N YF+ FIDD RK WVY LK K +V +G +K RS+ GGE+TS+EF E+C ++GIR TV +PQ NGV ER NRTI RSML+ +LPK FW EAV A YL RSPS + ++P+ W+ +++ +HL+VFG A HVP E R+KLDDKS IFIGY + GY+L++ ++++ SRDVVF E Sbjct: 483 LVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRE 706
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3) HSP 1 Score: 162.155 bits (409), Expect = 2.676e-39 Identity = 89/226 (39.38%), Postives = 127/226 (56.19%), Query Frame = 1 Query: 1 LIHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYLSYRSPSRSV--*GKMPQEAWSGRKLGITHLRVFGSIAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNE 672 ++H+DVCGP +L NYF++F+D F Y +K KS+V + + G E+ S E +FC GI LTV +PQ NGV ER RTI AR+M+ +L K FW EAV A YL R PSR++ K P E W +K + HLRVFG+ +VH+ ++ + K DDKS K IF+GY+ N G+KL+++ N + +++RDVV +E Sbjct: 483 VVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNK-QGKFDDKSFKSIFVGYEPN--GFKLWDAVNEKFIVARDVVVDE 705
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YL21B_YEAST (Transposon Ty2-LR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-LR1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12 Identity = 64/244 (26.23%), Postives = 102/244 (41.80%), Query Frame = 1 Query: 4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717 +HTD+ GP +YF+ F D+ R WVY L + E + + + + +RG E+T+K +F GI T + +GV ER NRT+ N R++L LP W AV + + S SP K ++ L IT + FG I + H PD SK+ + + NS GY +Y ++ V + + V ++ + S +D F + Sbjct: 664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDNQ----SKLDQFNY 897
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YD23B_YEAST (Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-DR3 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12 Identity = 64/244 (26.23%), Postives = 102/244 (41.80%), Query Frame = 1 Query: 4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717 +HTD+ GP +YF+ F D+ R WVY L + E + + + + +RG E+T+K +F GI T + +GV ER NRT+ N R++L LP W AV + + S SP K ++ L IT + FG I + H PD SK+ + + NS GY +Y ++ V + + V ++ + S +D F + Sbjct: 664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDNQ----SKLDQFNY 897
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YB21B_YEAST (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-B PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12 Identity = 64/244 (26.23%), Postives = 102/244 (41.80%), Query Frame = 1 Query: 4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717 +HTD+ GP +YF+ F D+ R WVY L + E + + + + +RG E+T+K +F GI T + +GV ER NRT+ N R++L LP W AV + + S SP K ++ L IT + FG I + H PD SK+ + + NS GY +Y ++ V + + V ++ + S +D F + Sbjct: 664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDNQ----SKLDQFNY 897
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YF21B_YEAST (Transposon Ty2-F/Ty2-GR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-F PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11 Identity = 64/244 (26.23%), Postives = 102/244 (41.80%), Query Frame = 1 Query: 4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717 +HTD+ GP +YF+ F D+ R WVY L + E + + + + +RG E+T+K +F GI T + +GV ER NRT+ N R++L LP W AV + + S SP K ++ L IT + FG I + H PD SK+ + + NS GY +Y ++ V + + V ++ + S +D F + Sbjct: 664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDKQ----SKLDQFNY 897
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YD21B_YEAST (Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-DR1 PE=1 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11 Identity = 64/244 (26.23%), Postives = 102/244 (41.80%), Query Frame = 1 Query: 4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717 +HTD+ GP +YF+ F D+ R WVY L + E + + + + +RG E+T+K +F GI T + +GV ER NRT+ N R++L LP W AV + + S SP K ++ L IT + FG I + H PD SK+ + + NS GY +Y ++ V + + V ++ + S +D F + Sbjct: 664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDKQ----SKLDQFNY 897
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YC21B_YEAST (Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-C PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11 Identity = 64/244 (26.23%), Postives = 102/244 (41.80%), Query Frame = 1 Query: 4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717 +HTD+ GP +YF+ F D+ R WVY L + E + + + + +RG E+T+K +F GI T + +GV ER NRT+ N R++L LP W AV + + S SP K ++ L IT + FG I + H PD SK+ + + NS GY +Y ++ V + + V ++ + S +D F + Sbjct: 664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDKQ----SKLDQFNY 897
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YO22B_YEAST (Transposon Ty2-OR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-OR2 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11 Identity = 61/232 (26.29%), Postives = 96/232 (41.38%), Query Frame = 1 Query: 4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGE 681 +HTD+ GP +YF+ F D+ R WVY L + E + + + + +RG E+T+K +F GI T + +GV ER NRT+ N R++L LP W AV + + S SP K ++ L IT + FG I + H PD SK+ + + NS GY +Y ++ V + + V + + Sbjct: 664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQNNQ 889
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YG21B_YEAST (Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-GR1 PE=3 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11 Identity = 61/226 (26.99%), Postives = 95/226 (42.04%), Query Frame = 1 Query: 4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVV 663 +HTD+ GP +YF+ F D+ R WVY L + E + + + + +RG E+T+K +F GI T + +GV ER NRT+ N R++L LP W AV + + S SP + K ++ L IT + FG I + H PD SK+ + + NS GY +Y ++ V + + V Sbjct: 664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKKR---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYV 883 The following BLAST results are available for this feature:
BLAST of CX675409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 43
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX675409 ID=CX675409; Name=CX675409; organism=Citrus sinensis; type=EST; length=726bpback to top |