CX675405

Overview
NameCX675405
Unique NameCX675405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9880 contig Csv1_Contig9880:771..1584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX675405 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17
Identity = 40/52 (76.92%), Postives = 49/52 (94.23%), Query Frame = -2 
Query:  657 EDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 812
            EDLIKDA+MAIRETLQGETLKSS+CTV+V+G  EPFH LDQE++QK+ID+F+
Sbjct:  185 EDLIKDAIMAIRETLQGETLKSSLCTVSVLGVDEPFHFLDQESIQKVIDTFE 236
[Close]
BLAST of CX675405 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.319e-16
Identity = 38/52 (73.08%), Postives = 48/52 (92.31%), Query Frame = -2 
Query:  657 EDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 812
            EDLIKDA++A+RETLQGETLKSS+CTVA++G  EPFH LDQE +QK+ID+F+
Sbjct:  185 EDLIKDAILAVRETLQGETLKSSLCTVAILGVDEPFHFLDQEAIQKVIDTFE 236
The following BLAST results are available for this feature:
BLAST of CX675405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSA1B_ARATH5.923e-1776.92Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]
PSA1A_ARATH1.319e-1673.08Proteasome subunit alpha type-1-A OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_62A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A08-B16-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675405 ID=CX675405; Name=CX675405; organism=Citrus sinensis; type=EST; length=813bp
TTTTTTTTCCCATGATCCTTGATTGTTTGATAACCGAAATTGAGTCGTAC
AAAAACAATACTAATTACTAATTTTCAATTGATGTAATTTTTTTTTTTTT
TTTGGGATAAAATGATGCATGCTAATCTTCATCTGGTTTCTCCTGATGAC
ATGCAAAATTCAATAGCAACCTTTGGCACGTAATCGTTCATATCAGTCTA
TGCCAGTTAGCTATGTGTACAGAAGTGAAACAAACACCAAATGTAGCAAA
AATAGAACTAAATATCACAAGACAAAATGTCATTTTCGGGTTCGCTCACT
GTATCTAAAGTGTTAAAGCAAGATGTTTGGAGTTTAGGAAAGGATACTAT
TAAAATGTTTGTACTGATAAGGCAAGATAAATTGCACCATAAGCGGAAAA
ATAAATTGTCCAACAGAATGATTTCCCGAAGTGCAACCCATATTCCATGG
AACCCATCAAACACATGCTTAAACTCCTCATCTAAAGACGAAAACCAAAA
AGCTGACTTCTGGTCCTTGCATCCTCAAATGTCCATTGGAGCTACACCCT
CGTCTGCTGGAGCACCCTGTTCTGAAGCTGCGCCTCCTTCTGCAGCACTG
CCTCCTTCTGCAGCACTATCTGGTGCAGCAGCAGGACCCTCTTCAGTGCC
AGCAATGTCAAATGAATCAATTAACTTTTGTACAGTTTCTTGATCTAAAA
TATGAAATGGCTCCCCAGCTCCTACCACAGCAACTGTGCAAATAGAACTC
TTTAGTGTTTCTCCTTGTAAGGTTTCCCTTATTGCCATGAGAGCGTCCTT
GATCAGATCTTCT
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