CK937965

Overview
NameCK937965
Unique NameCK937965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1408 contig Csv1_Contig1408:3..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937965 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.874e-77
Identity = 138/196 (70.41%), Postives = 165/196 (84.18%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKV 807
            + KSKV+RLFGRE+P+H VLG GKPADIF+W+NKK+S GVLGGATA WV+FEL+EYHL+TL+CH+ I+ LAVLFLWSNA+ FINKSPP+IP V +PE+ +L+ AS LR EINR  + LREIASGRDLKKFL  IAGLW+LSI+G   NF+TL YI  VLL TVP+ Y+KYEDK+D  GEKA IE+KKQYAV DEKV
Sbjct:   65 SMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKV 260          
BLAST of CK937965 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 9.543e-76
Identity = 134/196 (68.37%), Postives = 160/196 (81.63%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKV 807
            +FKSK++RLFGREKP+H VLG GKPADIFLWRNKK+S GVLG  TA WVLFEL EYHL+  +CH +I +LA LFLWSNA TFI+KS P IP V +PE  +L+  S LR EINR L +LR IASG+D+KKF+ VIAGLW+LSI+G+  NF+TLFY   VLL T+PV+YEKYEDK+D++GEKA  EIKKQYAV DEKV
Sbjct:   44 SFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKV 239          
BLAST of CK937965 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.777e-75
Identity = 132/196 (67.35%), Postives = 165/196 (84.18%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKV 807
            + KSKV+RLFGRE+P+H VLG GKPADIF+W++KK+S GV GGAT  WVLFEL+EYHL+TL+CH+ I++LAVLFLWSNA+ FI+KSPP+IP V +PE+ +L+ AS LR EINR ++ LREIASGRD+KKFL  IAGLW+LSI+G   +F+TL YI  VLL TVP+ Y+KYEDK+DS+GEKA  E+KKQYAV D KV
Sbjct:   61 SLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKV 256          
BLAST of CK937965 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 4.736e-75
Identity = 138/196 (70.41%), Postives = 161/196 (82.14%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKV 807
            + K+K++RLFGRE+P+H + G GKPADIFLWRNKK+S GVLG AT  W+LFELLEY+L+TL  HISIL+LAVLFLWS+ASTFI+KSP  IP V +PE  VL+ AS LR EINR   VLR+IASGRDLKKFL VIAGLW+LS VG+ CNF+TL YI  VLL T+PV+YEKYEDK+D FGEKA  EIKKQY  FD KV
Sbjct:   40 SLKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKV 235          
BLAST of CK937965 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.800e-74
Identity = 136/239 (56.90%), Postives = 176/239 (73.64%), Query Frame = 1
Query:   94 MAEHAPEHESADKSLVEKITXXXXXXXXXXXXXXXXXXXXXX-AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKV 807
            MAE   +    ++SL+EKI+                       A K+K++R+FGREKP+H VLG GKPAD+FLWR+KK+S  VLG ATA+WVLFEL+EYHL++L+CHISIL+L  LFLWSNA T INK+ P+IP + +PE+  L  AS+LR E+N+A  +LR IA GRDLKKFL V+ GLW++S+VGNW NF+TL YI FV+LHTVP++YEK+EDK+D   EKA  E++KQY VFDEKV
Sbjct:    1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKV 239          
BLAST of CK937965 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.419e-71
Identity = 125/196 (63.78%), Postives = 157/196 (80.10%), Query Frame = 1
Query:  220 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKV 807
            A K+K++RLFGREKP+H VLG G PAD+FLWR+KK+SA VLG ATA+WVLFEL+EYH ++LVCHI I +LA LFL SNA  F+NK+PP+IP + + E+  L   SALR E+N+A  +LR IA GRDLKKFL V+ GLW++S+VGNW NF+TL YI FV+LHTVP++YEK+EDK+D   EK   E+KK Y VFDEKV
Sbjct:   44 ALKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKV 239          
BLAST of CK937965 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.444e-55
Identity = 101/190 (53.16%), Postives = 139/190 (73.16%), Query Frame = 1
Query:  235 VFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEK 804
            ++R+FGRE+PIH VLG GKPAD+ LWR+KK++ G+L   T +W+LF      L+T +C  SIL L + FLWSNA   +NKSP  +  + +PEK +L+ ASA+ +E+N A A LR IA  RD+K F+  + GLWL+S++GNW +F++L YI FVL+HTVP++YEKYED+ID   EKA IE+KK Y VF+ K
Sbjct:   51 IYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEKAVIEMKKHYQVFEAK 237          
BLAST of CK937965 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.796e-51
Identity = 93/190 (48.95%), Postives = 132/190 (69.47%), Query Frame = 1
Query:  229 SKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFD 798
            S+  RLF R+KPIHHVLG GK AD+ LWRNKKISA VL GATA+WVLFE + +H ++LVC+  +L +   F+WSNAS F+N+S   +P + LP+ F  E   A+  E+NR L  L+++A   +LK+FL  + GLW+ ++VG+ CNF+T+ YI FV  HT+PV+YE+YED++D F +   ++    Y   D
Sbjct:   40 SRFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLD 229          
BLAST of CK937965 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.078e-38
Identity = 79/192 (41.15%), Postives = 114/192 (59.38%), Query Frame = 1
Query:  232 KVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKV 807
            K  +LF R++ IH + G GK ADI LWR  KI+A ++ G + +W L E++EY+ ITL+CH S+ S+   F+WS AS F+N   P IP V L E    + A +     N+ L  L ++A GRD   F      L+++SI+G + NFV L +I FV + T+PV+YE YED +D+   K   ++KK Y   D  V
Sbjct:   19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNV 210          
BLAST of CK937965 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.198e-31
Identity = 67/184 (36.41%), Postives = 105/184 (57.07%), Query Frame = 1
Query:  256 EKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKV 807
            E+ +H  +  G  AD+ +W+N++    +LG  T +W LFE   Y     V +  +LS+ +LFLW+ ++   N+  P++P + + E+FV   A A+R  IN  LAV REI  GR+ K+   V   LW +S VGN+ NF+T+ Y+  VL   +P +YE+Y+D ID         I+ QY   DE++
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERL 185          
The following BLAST results are available for this feature:
BLAST of CK937965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLA_ARATH3.874e-7770.41Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH9.543e-7668.37Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH2.777e-7567.35Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH4.736e-7570.41Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH1.800e-7456.90Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH5.419e-7163.78Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH5.444e-5553.16Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH2.796e-5148.95Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH2.078e-3841.15Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLJ_ARATH4.198e-3136.41Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004479_F05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IF_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937965 ID=CK937965; Name=CK937965; organism=Citrus sinensis; type=EST; length=809bp
GGGGGTTCCCACCGAGTCTCGCTCTCTCTCGTTCTAGAGTCTAGTACATT
TTTCAATTCATTTTCATCGGCGCTTACTCGGCGGCAGAGATCTATGGCGG
AACATGCACCTGAGCACGAATCAGCCGACAAATCACTGGTGGAGAAGATC
ACGGATAAGATCCATGGCCACGACTCCTCGTCATCTGACTCCGATGACGA
CAAGCCGTCGTCTATTGACGCCTTTAAGTCCAAAGTATTCAGGCTCTTCG
GAAGAGAAAAACCTATTCACCATGTCCTCGGAGCTGGAAAACCTGCTGAT
ATTTTCCTATGGAGGAACAAGAAAATCTCTGCTGGTGTGCTAGGTGGAGC
CACTGCAATGTGGGTTCTCTTTGAGTTGCTGGAATACCATTTAATCACTT
TGGTCTGCCATATATCGATTCTCTCTCTGGCTGTTCTCTTCCTGTGGTCC
AATGCATCCACATTTATCAACAAATCACCGCCAGAGATTCCAGTTGTTAC
ACTTCCTGAGAAGTTTGTCCTTGAATTCGCCTCTGCCTTGAGGTATGAAA
TCAACCGAGCCTTGGCTGTCCTGCGGGAAATTGCGTCTGGAAGGGACTTG
AAGAAGTTTCTTGGTGTCATTGCTGGCTTGTGGCTTTTGTCTATTGTCGG
TAATTGGTGCAACTTCGTGACATTATTCTACATTGTATTTGTTTTGCTAC
ACACCGTGCCCGTGATTTATGAGAAGTACGAGGACAAGATTGATTCATTT
GGTGAGAAGGCAACGATTGAGATCAAGAAGCAATATGCAGTCTTTGATGA
AAAGGTTTT
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