FC921782

Overview
NameFC921782
Unique NameFC921782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length330
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7742 contig Csv1_Contig7742:235..563. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921782 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.025e-13
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 2
Query:    2 YWLSPVAWNPYGLVTCPVGDLESLVEIPDGNNTKMTVKQFLQDNYDFQKDFLPVLSILPIVWMALFLFVFA 214
            YW +PVAW  YGL+T  VGD +S+V I    +  + +K  L++ + F+ DFLPV++++ I W+ LFLFVFA
Sbjct: 1375 YWATPVAWTLYGLITSQVGDKDSMVHISGIGD--IDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFA 1443          

HSP 2 Score: 21.1718 bits (43), Expect = 3.025e-13
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  216 YAIKAINFQRR 248
            Y IK +NFQRR
Sbjct: 1444 YGIKFLNFQRR 1454          
BLAST of FC921782 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.052e-12
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 2
Query:    2 YWLSPVAWNPYGLVTCPVGDLESLVEIPDGNNTKMTVKQFLQDNYDFQKDFLPVLSILPIVWMALFLFVFA 214
            YW SPVAW  YG++T  VGD +S+V I    +  M++K  L++ + F  DFLPV++++ I W+ +FLF FA
Sbjct: 1374 YWASPVAWTLYGIITSQVGDRDSIVHITGVGD--MSLKTLLKNGFGFDYDFLPVVAVVHIAWILIFLFAFA 1442          
BLAST of FC921782 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.999e-12
Identity = 29/73 (39.73%), Postives = 47/73 (64.38%), Query Frame = 2
Query:    2 YWLSPVAWNPYGLVTCPVGDLESLVEIPDGNNTKMTVKQFLQDNYDFQKDFLPVLSILPIVWMALFLFVFALC 220
            YW+ PVAW  YGL+    GD+E+ +++  G    +TVKQ+++D+Y FQ DF+  ++ + I +   F F+FA C
Sbjct: 1389 YWICPVAWTVYGLIVSQYGDVETRIQVL-GGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFC 1460          
The following BLAST results are available for this feature:
BLAST of FC921782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AB39G_ARATH3.025e-1346.48ABC transporter G family member 39 OS=Arabidopsis ... [more]
AB34G_ARATH1.052e-1245.07ABC transporter G family member 34 OS=Arabidopsis ... [more]
AB36G_ARATH3.999e-1239.73ABC transporter G family member 36 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC06052C07T7 RindPdigS Citrus sinensis cDNA clone C06052C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921782 ID=FC921782; Name=FC921782; organism=Citrus sinensis; type=EST; length=330bp
CTACTGGCTTTCTCCGGTGGCTTGGAATCCGTATGGCCTTGTTACTTGTC
CAGTTGGTGACTTAGAGTCCCTTGTGGAGATTCCTGATGGTAATAATACT
AAAATGACCGTGAAGCAATTCCTCCAAGATAATTATGATTTCCAGAAAGA
TTTCCTTCCTGTCCTTAGTATCCTGCCCATTGTCTGGATGGCCCTGTTCT
TGTTTGTGTTTGCCCTATGCCATCAAGGCCATCAACTTCCAAAGGAGATA
AACCAGCTCAAATCTTAAGAATGATAGACCTAAGTGAGCATGTGGGAAAC
AAAAGGTTACCACATTTTTTTTTTTCTTTT
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