CX675401

Overview
NameCX675401
Unique NameCX675401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675401 vs. ExPASy Swiss-Prot
Match: ATK1_ARATH (Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.510e-59
Identity = 124/237 (52.32%), Postives = 159/237 (67.09%), Query Frame = 2
Query:    2 RSPSIKKEGTDDVPFDKXXXXXXXXXXXXXXXXXXXPRQAFAVVNNRQDVSAASDMASTEGSDCGTIEFTKEEVEALLNEKPKTKKFDLKAKIEQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYN 712
            RSP+ KKEG   + FDK                    RQAF+ VN +QDV+  SD+ S E  +CG ++FTK+E+ ALL+E+ K  KFD KAKIEQMT+  KR K+C+KWFQQ DE HV EK+ ++ +LES+E+K +  E+E + +E EL  TI  L +    L EK+AKEES   DAIE HR EKEARVAAEK+QASL E+L+K  ++  AA Q+  SL+DMYKRLQEYN SLQ YN
Sbjct:   11 RSPNAKKEGLGGISFDKRRKVETQGGTGR--------RQAFSAVN-KQDVTMNSDVGSIE--ECGKVDFTKDEILALLSERAKAGKFDTKAKIEQMTDIIKRLKVCVKWFQQADETHVQEKENLKVSLESSEQKYNHKELEARTKEEELQATISKLEENVVSLHEKLAKEESSTQDAIECHRREKEARVAAEKVQASLGEELDKVKEEKMAAKQKVTSLEDMYKRLQEYNTSLQQYN 236          
BLAST of CX675401 vs. ExPASy Swiss-Prot
Match: ATK3_ARATH (Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.273e-46
Identity = 97/201 (48.26%), Postives = 142/201 (70.65%), Query Frame = 2
Query:  113 RQAFAVVNNRQDVSAASDMASTEGSDCGTIEFTKEEVEALLNEKPKTK-KFDLKAKIEQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYN 712
            R AF V N  +D++  S  AST GS+ G +EFT+E+VE LLNE+ K K KF+ K + E M ++ KR +LCI+WFQ+++ ++  E++K+++ALE  EK   D E+ +KN+E ELN  I +LR+    ++ ++A+E++EKL A ++   EKEAR++ EK QA L+E+L KA  D+  ANQR  S++DMYK LQEYN SLQLYN
Sbjct:   12 RSAFPVTNGSKDLTPNSAPASTTGSEYGPVEFTREDVETLLNERIKYKSKFNYKERCENMMDYIKRLRLCIRWFQELELDYAFEQEKLKNALELNEKHCVDMEVSLKNKEEELNMIIEELRKNFESVQVQLAREQTEKLAANDSLGKEKEARLSVEKAQAGLTEELGKAQGDLQTANQRIQSVNDMYKLLQEYNSSLQLYN 212          
BLAST of CX675401 vs. ExPASy Swiss-Prot
Match: ATK2_ARATH (Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.038e-40
Identity = 84/185 (45.41%), Postives = 133/185 (71.89%), Query Frame = 2
Query:  164 DMASTEGSDCG-TIEFTKEEVEALLNEKPKTK-KFDLKAKIEQMTEHNKRFKLCIKWFQQVDENHVLEKQKIQSALESTEKKLSDTEMEMKNRESELNGTILDLRQENAHLREKVAKEESEKLDAIENHRIEKEARVAAEKLQASLSEQLEKAHQDIAAANQRAVSLDDMYKRLQEYNQSLQLYN 712
            D+ S EGS+ G  +EFT+E+VE LL+E+ K K K++ K + E   ++ KR +LCI+WFQ+++ ++  E++K+++A+E  EK  +D E+ +K +E ELN  I +LR+  A ++ ++AKE++EKL A E+   E+EAR+A E LQA+++E+L K   ++  ANQR  +++DMYK LQEYN SLQLYN
Sbjct:   19 DLTSNEGSEYGGPVEFTREDVETLLHERIKYKSKYNYKERCENTMDYVKRLRLCIRWFQELELDYAFEQEKLKNAMEMNEKHCADLEVNLKVKEEELNMVIDELRKNFASVQVQLAKEQTEKLAANESLGKEREARIAVESLQAAITEELAKTQGELQTANQRIQAVNDMYKLLQEYNSSLQLYN 203          
The following BLAST results are available for this feature:
BLAST of CX675401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ATK1_ARATH6.510e-5952.32Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=... [more]
ATK3_ARATH1.273e-4648.26Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=... [more]
ATK2_ARATH3.038e-4045.41Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_62A05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A05-B10-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675401 ID=CX675401; Name=CX675401; organism=Citrus sinensis; type=EST; length=714bp
TCGAAGCCCATCTATTAAGAAAGAGGGTACAGATGATGTTCCATTTGATA
AGAGGAGGAGGATAGGGGCAGGAAGAACAACGGGGGCCACAAGTACTGGA
ACTGGACGTCCGCGGCAGGCATTTGCTGTCGTTAATAATAGGCAAGATGT
ATCGGCAGCAAGTGATATGGCAAGCACCGAGGGTTCAGATTGTGGGACTA
TTGAGTTTACAAAAGAGGAAGTTGAGGCTTTGTTGAATGAGAAGCCGAAA
ACAAAAAAGTTTGATCTTAAGGCAAAAATTGAGCAAATGACTGAGCATAA
CAAGAGGTTCAAGCTTTGCATCAAATGGTTTCAGCAAGTTGATGAAAACC
ATGTTCTTGAGAAGCAAAAGATTCAGAGTGCATTGGAGTCTACTGAGAAG
AAATTATCTGATACTGAAATGGAGATGAAGAATAGGGAGAGTGAACTGAA
TGGAACTATTTTAGACTTGAGGCAAGAAAATGCCCATTTGCGAGAGAAAG
TTGCAAAAGAAGAATCAGAAAAGCTGGATGCAATTGAAAATCATAGAATA
GAAAAGGAAGCTAGAGTTGCTGCTGAAAAGTTACAAGCTTCTCTCTCAGA
ACAGCTTGAAAAAGCTCATCAAGACATTGCAGCTGCCAACCAGAGGGCTG
TCTCTCTTGACGATATGTACAAACGGTTACAGGAGTATAATCAGAGTCTA
CAACTCTACAATGC
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