CK937941

Overview
NameCK937941
Unique NameCK937941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8961 contig Csv1_Contig8961:105..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937941 vs. ExPASy Swiss-Prot
Match: TDT_ARATH (Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 7.267e-34
Identity = 69/88 (78.41%), Postives = 79/88 (89.77%), Query Frame = 3
Query:    6 LVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTDGDV 269
            L++PLLI+IAK M +HPLLLMVPGAIGAQF+FLLPTGTPSN+VGFTTGHIEI+DMIKTGLPLKIAG   ++ LMPTLGAYVF + G V
Sbjct:  453 LLVPLLIEIAKNMGIHPLLLMVPGAIGAQFAFLLPTGTPSNVVGFTTGHIEIKDMIKTGLPLKIAGTIFLSILMPTLGAYVFASMGGV 540          
BLAST of CK937941 vs. ExPASy Swiss-Prot
Match: S13A3_MOUSE (Solute carrier family 13 member 3 OS=Mus musculus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.349e-16
Identity = 33/82 (40.24%), Postives = 56/82 (68.29%), Query Frame = 3
Query:    6 LVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVF 251
            + LP+L ++A  +HVHPL LM+PG +G  ++F+LP  TP N + F+TGH+ ++DM++TGL + + G+  ++  M T    +F
Sbjct:  488 IFLPVLAELAIRLHVHPLYLMIPGTVGCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQTIF 569          
BLAST of CK937941 vs. ExPASy Swiss-Prot
Match: S13A3_RAT (Solute carrier family 13 member 3 OS=Rattus norvegicus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.166e-15
Identity = 32/82 (39.02%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    6 LVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVF 251
            + LP+L ++A  +HVHPL LM+PG +   ++F+LP  TP N + F+TGH+ ++DM++TGL + + G+  ++  M T    +F
Sbjct:  488 IFLPVLAELAIRLHVHPLYLMIPGTVSCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQAIF 569          
BLAST of CK937941 vs. ExPASy Swiss-Prot
Match: S13A3_HUMAN (Solute carrier family 13 member 3 OS=Homo sapiens GN=SLC13A3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.392e-15
Identity = 32/82 (39.02%), Postives = 54/82 (65.85%), Query Frame = 3
Query:    6 LVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVF 251
            + LP+L ++A  + VHPL LM+PG +G  F+F+LP  TP N + F +GH+ ++DM++TGL + + G+  ++  M T    +F
Sbjct:  490 IFLPVLAELAIRLRVHPLYLMIPGTVGCSFAFMLPVSTPPNSIAFASGHLLVKDMVRTGLLMNLMGVLLLSLAMNTWAQTIF 571          
BLAST of CK937941 vs. ExPASy Swiss-Prot
Match: S13A5_RAT (Solute carrier family 13 member 5 OS=Rattus norvegicus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 3
Query:    6 LVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTD 260
            L LP+   +A+++ +HPL +M+P  + A  +F+LP  TP N + F  GH+++ DM+KTGL + I GIA++   + T G  VF  D
Sbjct:  475 LFLPIFASMARSIGIHPLYVMIPCTLSASLAFMLPVATPPNAIVFAYGHLKVIDMVKTGLVMNILGIASVFLSVNTWGRAVFNLD 559          
BLAST of CK937941 vs. ExPASy Swiss-Prot
Match: S13A5_HUMAN (Solute carrier family 13 member 5 OS=Homo sapiens GN=SLC13A5 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 30/85 (35.29%), Postives = 54/85 (63.53%), Query Frame = 3
Query:    6 LVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTD 260
            L LP+   +++++ ++PL +M+P  + A F+F+LP  TP N + FT GH+++ DM+KTG+ + I G+  +   + T G  +F  D
Sbjct:  471 LFLPIFASMSRSIGLNPLYIMLPCTLSASFAFMLPVATPPNAIVFTYGHLKVADMVKTGVIMNIIGVFCVFLAVNTWGRAIFDLD 555          
BLAST of CK937941 vs. ExPASy Swiss-Prot
Match: S13A5_MOUSE (Solute carrier family 13 member 5 OS=Mus musculus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.687e-12
Identity = 31/85 (36.47%), Postives = 51/85 (60.00%), Query Frame = 3
Query:    6 LVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTD 260
            L LP+   +A+++ +HPL +M+P  + A  +F+LP  TP N + F  GH+ + DM+KTGL +   GI ++   + T G  +F  D
Sbjct:  475 LFLPIFASMARSIGIHPLYVMIPCTMSASLAFMLPVATPPNAIVFAYGHLRVVDMMKTGLIMNFVGILSVFLSVNTWGRAMFNLD 559          
BLAST of CK937941 vs. ExPASy Swiss-Prot
Match: S13A1_HUMAN (Solute carrier family 13 member 1 OS=Homo sapiens GN=SLC13A1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 30/87 (34.48%), Postives = 53/87 (60.92%), Query Frame = 3
Query:    6 LVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAM-----AFLMPTLGAYVF 251
            L LP+L  +A+ +HV+PL +++P  +   F+FLLP   P N + F+ GH+++ DM+K GL + I G+A +      +++P    Y +
Sbjct:  496 LFLPILSPLAEAIHVNPLYILIPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAGLGVNIVGVAVVMLGICTWIVPMFDLYTY 582          
BLAST of CK937941 vs. ExPASy Swiss-Prot
Match: S13A4_HUMAN (Solute carrier family 13 member 4 OS=Homo sapiens GN=SLC13A4 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.334e-11
Identity = 28/85 (32.94%), Postives = 52/85 (61.18%), Query Frame = 3
Query:    6 LVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTD 260
            + LP+L  +++T+H++PL  ++P  +   F+ +LP G P N + F+ GH +I+DM+K GL + + G+  +   + T G  +F  D
Sbjct:  527 IFLPILCSLSETLHINPLYTLIPVTMCISFAVMLPVGNPPNAIVFSYGHCQIKDMVKAGLGVNVIGLVIVMVAINTWGVSLFHLD 611          
BLAST of CK937941 vs. ExPASy Swiss-Prot
Match: SDCS_STAS1 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sdcS PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 3
Query:    6 LVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAMAFLMPTLGAYVFGTD 260
            ++LP+L  ++  ++VHPLLLMVP A+ A  +++LP GTP N + F TG I I+ M   G  + +  I  +  ++  L   V G D
Sbjct:  427 MILPILATLSVAVNVHPLLLMVPAAMAANCAYMLPVGTPPNAIVFGTGKISIKKMASVGFWVNLLSIVVIVLVVYFLVPPVLGID 511          
The following BLAST results are available for this feature:
BLAST of CK937941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TDT_ARATH7.267e-3478.41Tonoplast dicarboxylate transporter OS=Arabidopsis... [more]
S13A3_MOUSE2.349e-1640.24Solute carrier family 13 member 3 OS=Mus musculus ... [more]
S13A3_RAT1.166e-1539.02Solute carrier family 13 member 3 OS=Rattus norveg... [more]
S13A3_HUMAN3.392e-1539.02Solute carrier family 13 member 3 OS=Homo sapiens ... [more]
S13A5_RAT4.897e-1440.00Solute carrier family 13 member 5 OS=Rattus norveg... [more]
S13A5_HUMAN1.575e-1235.29Solute carrier family 13 member 5 OS=Homo sapiens ... [more]
S13A5_MOUSE2.687e-1236.47Solute carrier family 13 member 5 OS=Mus musculus ... [more]
S13A1_HUMAN5.987e-1234.48Solute carrier family 13 member 1 OS=Homo sapiens ... [more]
S13A4_HUMAN1.334e-1132.94Solute carrier family 13 member 4 OS=Homo sapiens ... [more]
SDCS_STAS18.645e-1137.65Sodium-dependent dicarboxylate transporter sdcS OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004479_H10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937941 ID=CK937941; Name=CK937941; organism=Citrus sinensis; type=EST; length=490bp
GGGCTCTCGTTCTTCCACTTTTGATCCAAATAGCAAAAACTATGCATGTT
CATCCATTGCTTCTTATGGTTCCTGGAGCAATTGGAGCACAATTTTCTTT
CTTGTTGCCGACTGGAACCCCTTCAAATATTGTTGGATTCACAACCGGGC
ACATCGAAATTCAAGATATGATCAAGACAGGGCTGCCCCTTAAGATTGCT
GGCATTGCTGCTATGGCCTTTCTAATGCCTACACTTGGTGCTTATGTTTT
TGGGACAGATGGGGATGTTCAGTAGCTGCAAACTCTTGTAAACTGTGGAG
GTTTCTCTCAATCAAGTCTCCGTAACAGGCATTGGGGGACCCTGAATAGG
AATTATAGCAATGCTAGTGTTTGCACACCATATTGAGTTTTTCCTATAAG
AAAAGACGCCTATTGTATATTTGCGTGCCTAATGAATGCTTCCCTTAGTG
GTTAGCACACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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