CK937930

Overview
NameCK937930
Unique NameCK937930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length393
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937930 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.266e-26
Identity = 55/78 (70.51%), Postives = 63/78 (80.77%), Query Frame = 2
Query:   47 LLSRCACGFAVLSVFSVSLQIIVTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 280
            +L+    GFAV  V   ++ I  TGINPARSLGAA+IYNKDKAWD  W+FWVGPF GAAIAAFYHQF+LRAGA+KALG
Sbjct:  201 VLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAIIYNKDKAWDHHWIFWVGPFAGAAIAAFYHQFVLRAGAIKALG 278          
BLAST of CK937930 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.654e-26
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 2
Query:   47 LLSRCACGFAVLSVFSVSLQIIVTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 280
            +L+    GFAV  V   ++ +  TGINPARSLGAAVIYNKDK WDD W+FWVGP +GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  207 VLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRAGAIKALG 284          
BLAST of CK937930 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.821e-26
Identity = 53/78 (67.95%), Postives = 63/78 (80.77%), Query Frame = 2
Query:   47 LLSRCACGFAVLSVFSVSLQIIVTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 280
            +L+    GFAV  V   ++ +  TGINPARSLGAAV+YNKDK WDD W+FWVGP +GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  209 VLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKALG 286          
BLAST of CK937930 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.208e-26
Identity = 53/78 (67.95%), Postives = 62/78 (79.49%), Query Frame = 2
Query:   47 LLSRCACGFAVLSVFSVSLQIIVTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 280
            +L+    GF+V  V   ++ I  TGINPARS GAAVIYN  KAWDDQW+FWVGPF+GAAIAAFYHQF+LRAGA+KA G
Sbjct:  201 VLAPLPIGFSVFMVHLATIPITGTGINPARSFGAAVIYNNQKAWDDQWIFWVGPFVGAAIAAFYHQFVLRAGAMKAYG 278          
BLAST of CK937930 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.829e-25
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 2
Query:   47 LLSRCACGFAVLSVFSVSLQIIVTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 280
            +L+    GFAV  V   ++ I  TGINPARS GAAVIYN +KAWDDQW+FWVGP IGAA AAFYHQFILRA A+KALG
Sbjct:  202 VLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKALG 279          
BLAST of CK937930 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.075e-25
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = 2
Query:   47 LLSRCACGFAVLSVFSVSLQIIVTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 280
            +L+    GFAV  V   ++ I  TGINPARS+GAAVI+N +KAW + W+FWVGPF+GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  207 VLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYILRAGAIKALG 284          
BLAST of CK937930 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.022e-24
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 2
Query:   47 LLSRCACGFAVLSVFSVSLQIIVTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 280
            +L+    GFAV  V   ++ I  TGINPARS GAAVIYNK K WDD W+FWVGPFIGAAIAAFYHQF+LRA   K+LG
Sbjct:  200 VLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLG 277          
BLAST of CK937930 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.022e-24
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 2
Query:   47 LLSRCACGFAVLSVFSVSLQIIVTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 280
            +L+    GFAV  V   ++ I  TGINPARS GAAVIYNK K WDD W+FWVGPFIGAAIAAFYHQF+LRA   K+LG
Sbjct:  202 VLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLG 279          
BLAST of CK937930 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.449e-24
Identity = 52/75 (69.33%), Postives = 59/75 (78.67%), Query Frame = 2
Query:   47 LLSRCACGFAVLSVFSVSLQIIVTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 271
            +L+    GFAV  V   ++ I  TGINPARSLGAAVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  206 VLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK 280          
BLAST of CK937930 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.449e-24
Identity = 52/75 (69.33%), Postives = 59/75 (78.67%), Query Frame = 2
Query:   47 LLSRCACGFAVLSVFSVSLQIIVTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 271
            +L+    GFAV  V   ++ I  TGINPARSLGAAVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  207 VLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK 281          
The following BLAST results are available for this feature:
BLAST of CK937930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP25_ARATH1.266e-2670.51Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP21_MAIZE1.654e-2669.23Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP22_MAIZE2.821e-2667.95Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP26_ARATH8.208e-2667.95Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP24_ARATH1.829e-2569.23Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP21_ORYSJ9.075e-2565.38Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP22_ARATH2.022e-2466.67Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP21_ARATH2.022e-2466.67Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP24_MAIZE3.449e-2469.33Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE3.449e-2469.33Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004480_A10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937930 ID=CK937930; Name=CK937930; organism=Citrus sinensis; type=EST; length=393bp
GCGGGGATACCANNNACAACCAAAAAAAAAAAGAAAAAGAAAAAGGCTTC
TCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCTGTTTCT
CTCCAAATCATTGTCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGC
TGTTATTTACAACAAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGG
TTGGACCCTTCATCGGTGCAGCAATTGCGGCTTTCTACCACCAATTCATC
TTGAGAGCTGGAGCTGTCAAGGCTCTTGGTTCATTCAGGAGCCAATCCCG
TGTCTGATTTTAGTTTCGACAAGTGGATTATCCACATCTTCATGGGGTTA
ATGATTTAAAATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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