CK937916

Overview
NameCK937916
Unique NameCK937916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937916 vs. ExPASy Swiss-Prot
Match: FDL1_ARATH (F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.232e-67
Identity = 133/193 (68.91%), Postives = 146/193 (75.65%), Query Frame = 2
Query:  134 MGDAAEDFISDLPQSILENILTRLPIGDAVRTCILSSKWRYKWATLTQLVFDENCVPISNDRVPVEKSLVKFITHALFLHQGPIHKFQLSTVHLQSCPDIDQWLLFLSRNDIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSLNLHQVLVAPEAIEXXXXXXXXXXXXXXXYFD 712
            MG++  DFISDLPQSI+ENILTRL I DA+RT +LSSKWRYKW+TLT LVFDE CV  SNDR  VE +LV+FIT  L LHQGPIHKFQLST   Q  PDIDQWLLFLSRN I+ELVL+LGEGE FRVP+CLFNC KLT LEL  CEFDPP  F GF  L+SLNLHQ+LVAPE IE               YFD
Sbjct:    1 MGESP-DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSNDRCVVETNLVRFITGVLLLHQGPIHKFQLSTSFKQCRPDIDQWLLFLSRNGIKELVLKLGEGE-FRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLISGCPLLEFLSLSYFD 191          
BLAST of CK937916 vs. ExPASy Swiss-Prot
Match: FDL14_ARATH (F-box/FBD/LRR-repeat protein At2g04230 OS=Arabidopsis thaliana GN=At2g04230 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 51/160 (31.87%), Postives = 76/160 (47.50%), Query Frame = 2
Query:  149 EDFISDLPQSILENILTRLPIGDAVRTCILSSKWRYKWATLTQLVFDENCVPISNDRVPVEKSLVKFITHALFLHQGPI-HKFQLSTVHLQSCPDIDQWLLFLSRNDIRELVLE--LGEGEWFRVPSCLFNCRKLTRLELFRCEFDPPLTFTGFPCLRSL 619
            ED ISDLP ++L  IL+ LP  +A+ T +LS +WR  W  L +L FD N  P+ +D         + +   L LH+ P+     LS      C  +  W+       +R+LVL+    E +   +PS LF+      +   +C  D  L F    CL+SL
Sbjct:   12 EDRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSNFNPVFDDDNIDPTMFSENVYKTLSLHKAPVLESLHLSFEGRTDCLHVGIWIATAFARGVRKLVLDSFYQEDQTVTLPSVLFSYNDSLEILKLKCAID--LDFPSRVCLKSL 169          
BLAST of CK937916 vs. ExPASy Swiss-Prot
Match: FBL73_ARATH (Putative F-box/LRR-repeat protein At4g13965 OS=Arabidopsis thaliana GN=At4g13965 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 58/165 (35.15%), Postives = 86/165 (52.12%), Query Frame = 2
Query:  152 DFISDLPQSILENILTRLPIGDAVRTCILSSKWRYKWATLTQLVFDENCVPISNDRVPVEKSLVKFITHALFLHQGPI-HKFQLSTVHLQSCPDIDQWLL--FLSRNDIRELVLELGEGEWFRVPSCLFNCRKLTRLEL-FRCEFDPPLTFTGFPCLRSLNLHQV 634
            D IS LP++++  IL+ LP   AV T +LS +W++ W  L +L FD      S D+    K+  K +  AL  H+ P+ H   L  VHL  C  ++   L       ++R+LVLE+ +G  F +P  L+NC  L  LEL +    D P +      LR+L+LH V
Sbjct:   14 DRISQLPEALIIQILSLLPTEVAVTTSVLSKQWQFLWKMLPKLNFD------SLDQRHEFKTFSKNVKRALLSHKAPVLHSLHL-IVHLHLCNSMNTAKLIGIAFACNLRKLVLEV-DGGRFSIPESLYNCETLDTLELKYSILMDVPSSIC-LKSLRTLHLHYV 169          
BLAST of CK937916 vs. ExPASy Swiss-Prot
Match: FBL46_ARATH (F-box/LRR-repeat protein At3g26920 OS=Arabidopsis thaliana GN=At3g26920 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 53/170 (31.18%), Postives = 82/170 (48.24%), Query Frame = 2
Query:  149 EDFISDLPQSILENILTRLPIGDAVRTCILSSKWRYKWATLTQLVFDENCVPISNDRVPVEKSLVKFITHALFLHQGPIHKFQLSTVHLQ---SCP----DIDQWLLFLSRNDIRELVLELGEGEWFRVPSCLFNCRKLTRLELFRC-EFDPPLTFTGFPCLRSLNLHQV 634
            ED IS LP+++L  IL+ LP  + V   +L+ +WR+ W  +  L F             +E+     ++  LF HQ P     L ++HL     C     D +  +       +R+LVL++  G+WF+ P+ L+N   L  LEL+ C   D P        LR+LNLH+V
Sbjct:   16 EDRISQLPEALLLQILSLLPTKEVVAVSVLAKRWRFLWKMVPSLEF------FYYFTYDLERFSYN-VSKCLFSHQAPF----LQSLHLNMNFGCDPRIMDFEILIGIAFGRQLRKLVLKVYSGDWFKFPTSLYNSETLETLELYHCILIDVPFPVC-LKSLRTLNLHEV 173          
BLAST of CK937916 vs. ExPASy Swiss-Prot
Match: FDL21_ARATH (F-box/FBD/LRR-repeat protein At3g52680 OS=Arabidopsis thaliana GN=At3g52680 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 51/161 (31.68%), Postives = 74/161 (45.96%), Query Frame = 2
Query:  125 TMQMGDA-------AEDFISDLPQSILENILTRLPIGDAVRTCILSSKWRYKWATLTQLVFDENCVPISNDRVPVEKSLVKFITHALFLHQGPI-HKFQLSTVHLQSCPDIDQWLLFLSRNDIRELVL-----ELGEGEWFRVPSCLFNCRKLTRLELFRC 568
            TM+ G++        +D IS+LP  +L  IL+ LP    V T +LS +WR  W  +  L FD      S+D      +  + +  +   H+ P+   F+L  V+     DI  W+       +RELVL     ELG+G  F  PS L  C  L  L+L  C
Sbjct:    5 TMEQGESLRIRVVMGKDRISELPDGLLLKILSSLPTNIVVATSVLSKQWRSLWKLVPNLEFD------SDDYESEHYTFSEIVCKSFLSHKAPVLESFRLKFVNFNPV-DIGLWVGIAFSRHLRELVLDFYPAELGKGVTFTFPSSLCTCNTLETLKLVLC 158          
BLAST of CK937916 vs. ExPASy Swiss-Prot
Match: FDL30_ARATH (Putative F-box/FBD/LRR-repeat protein At5g22610 OS=Arabidopsis thaliana GN=At5g22610 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 56/182 (30.77%), Postives = 87/182 (47.80%), Query Frame = 2
Query:  143 AAEDFISDLPQSILENILTRLPIGDAVRTCILSSKWRYKWATLTQLVFDENCVPISNDRVPVEKSLVKFITHALFL--HQGP-IHKFQLSTVHLQSCPD-IDQWLLFLSRNDIRELVLELG----EGE-WFRVPSCLFNCRKLTRLELFRC---EFDPPLTFTGFPCLRSLNLHQVLVAPEA 652
            A ED IS LP+ +L  IL+ LP  D VRT +LS +W+  W  +  L  D       +   P   + V F+   LF    + P +HK +LS    ++ P  +  W   ++R  ++ L +E G    E E W  +P  L+ C+ L  L L+R     FD   +    P L+S+ L + + + EA
Sbjct:   15 AIEDLISKLPEVLLSQILSYLPTKDIVRTSVLSKRWKSVWLLIPGLDLD-------SSEFPHYDTFVDFMNEFLFFSREENPCLHKLKLSIQKNENDPSCVTLWTDCVARGKLQHLDVEFGGRVMEREFWEMMPLSLYICKTLLHLRLYRVLLGNFDQ--SVDSLPSLKSMCLEENVYSNEA 187          
The following BLAST results are available for this feature:
BLAST of CK937916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FDL1_ARATH2.232e-6768.91F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidop... [more]
FDL14_ARATH1.421e-1331.88F-box/FBD/LRR-repeat protein At2g04230 OS=Arabidop... [more]
FBL73_ARATH7.053e-1335.15Putative F-box/LRR-repeat protein At4g13965 OS=Ara... [more]
FBL46_ARATH2.680e-1231.18F-box/LRR-repeat protein At3g26920 OS=Arabidopsis ... [more]
FDL21_ARATH1.737e-1131.68F-box/FBD/LRR-repeat protein At3g52680 OS=Arabidop... [more]
FDL30_ARATH3.870e-1130.77Putative F-box/FBD/LRR-repeat protein At5g22610 OS... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004480_D08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937916 ID=CK937916; Name=CK937916; organism=Citrus sinensis; type=EST; length=713bp
GGGGAAGGGACAAACGGTTCCTTCGCTCTGGTCGGGAGCTCTCATCACGG
TCTTTCCAGAGATGTAAGAACGACGAAGAAGAAGAGAAGACATATTACTT
ATAATGTTCGTCTAAGTAATAAATACGATGCAGATGGGTGATGCTGCGGA
GGATTTCATAAGCGATCTTCCGCAAAGCATTTTAGAAAATATCCTCACTC
GATTACCGATAGGGGATGCGGTGAGAACTTGCATTTTATCAAGTAAATGG
AGGTACAAATGGGCTACACTCACTCAACTTGTGTTCGATGAAAACTGTGT
TCCCATTTCTAATGACCGAGTTCCAGTTGAGAAGAGCCTTGTGAAATTTA
TCACTCATGCTCTTTTTCTTCATCAAGGACCGATTCACAAGTTCCAGCTT
TCTACTGTGCATTTGCAGTCCTGCCCGGACATTGATCAGTGGTTACTTTT
CCTTTCCAGGAATGATATCAGGGAATTGGTTCTTGAATTAGGAGAAGGGG
AGTGGTTTAGAGTACCTTCTTGTCTTTTTAACTGTAGGAAATTAACTCGT
TTGGAGCTGTTTCGATGCGAGTTTGATCCTCCTCTGACTTTTACTGGATT
TCCTTGCTTGAGGAGTCTTAATCTTCATCAAGTTTTGGTTGCCCCTGAGG
CAATTGAAAGTCTCATTTCCAGTTGCCCACTGCTGGAGAGCCTCTCATTG
TCATATTTTGACA
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