CX675396

Overview
NameCX675396
Unique NameCX675396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6417 contig Csv1_Contig6417:749..1370. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675396 vs. ExPASy Swiss-Prot
Match: YQJG_ECOLI (Uncharacterized protein yqjG OS=Escherichia coli (strain K12) GN=yqjG PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.539e-25
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = -2
Query:  305 LRFDEVYAVHFKCNKKLLREYPNLFNYTKDIYQIPSMSSTVNMQHIKRHYYGSHPSINPYGIIPLGPDIDYSSPHDRE 538
            +RFD VY  HFKC+K  + +Y NL+ + +DIYQ+P ++ TVN  HI+ HY+ SH +INP GII +GP  D   PH R+
Sbjct:  247 VRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRD 324          

HSP 2 Score: 41.2022 bits (95), Expect = 2.539e-25
Identity = 18/28 (64.29%), Postives = 24/28 (85.71%), Query Frame = -1
Query:  537 KCEKILGKQRYICGNRLTEADIRLFVTL 620
            + E+ILG+ RY+ GN+LTEADIRL+ TL
Sbjct:  219 RLEQILGQHRYLTGNQLTEADIRLWTTL 246          
BLAST of CX675396 vs. ExPASy Swiss-Prot
Match: GTO2_SCHPO (Glutathione S-transferase omega-like 2 OS=Schizosaccharomyces pombe GN=gto2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.962e-12
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = -2
Query:  338 LRFDEVYAVHFKCNKKLLRE-YPNLFNYTKDIY-QIPSMSSTVNMQHIKRHYYGSHPSINPYGIIPLGP 538
            +RFD VY  HFKCN   +R  YP++  + K +Y + P+   T + +HIK HY  SH  INP GI PLGP
Sbjct:  238 VRFDPVYVQHFKCNIGTIRHNYPHINQWLKRLYWKHPAFHETTDFKHIKCHYTQSHTQINPLGITPLGP 306          

HSP 2 Score: 25.7942 bits (55), Expect = 1.962e-12
Identity = 10/30 (33.33%), Postives = 21/30 (70.00%), Query Frame = -1
Query:  537 KCEKILGKQR--YICGNRLTEADIRLFVTL 620
            + E++L + +  ++ G+ LTE D+RL+ T+
Sbjct:  208 RLEQVLKESKGPFLLGDHLTETDVRLYTTI 237          
BLAST of CX675396 vs. ExPASy Swiss-Prot
Match: GTO2_YEAST (Glutathione S-transferase omega-like 2 OS=Saccharomyces cerevisiae GN=ECM4 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 5.549e-12
Identity = 32/72 (44.44%), Postives = 41/72 (56.94%), Query Frame = -2
Query:  329 LRFDEVYAVHFKCNKKLLRE-YPNLFNYTKDIY-QIPSMSSTVNMQHIKRHYYGSHPSINPYGIIPLGPDID 538
            +RFD VY  HFKCN   +R  YP +  + +++Y    +   T +  HIK HY  SH  INP GI PLGP  D
Sbjct:  295 IRFDPVYVQHFKCNFTSIRAGYPFIHLWVRNLYWNYDAFRYTTDFDHIKLHYTRSHTRINPLGITPLGPKPD 366          

HSP 2 Score: 28.8758 bits (63), Expect = 5.549e-12
Identity = 14/26 (53.85%), Postives = 21/26 (80.77%), Query Frame = -1
Query:  537 EKILGKQRYICGNRLTEADIRLFVTL 614
            +KILG + +  G++LTEADIRL+ T+
Sbjct:  270 QKILG-EFFTVGDQLTEADIRLYTTV 294          
The following BLAST results are available for this feature:
BLAST of CX675396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YQJG_ECOLI2.539e-2550.00Uncharacterized protein yqjG OS=Escherichia coli (... [more]
GTO2_SCHPO1.962e-1247.83Glutathione S-transferase omega-like 2 OS=Schizosa... [more]
GTO2_YEAST5.549e-1244.44Glutathione S-transferase omega-like 2 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_62A03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A03-B6-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675396 ID=CX675396; Name=CX675396; organism=Citrus sinensis; type=EST; length=620bp
TTTTTTTTAAATCGCAATAATCTTTCAGATACACCATTCATAGAATTTCA
TAGGGGAAAAAAATCATCCCAGTTTCTCTCAAAATGCAATGTCCCATACT
TTAGTAAATCCAGTAAGCCTCCAGTCCCTGAAATTTATTTACCAAGTTTC
TCAAGAGAGAGCATTCACAATAAATTTATTTAATAACATCACACACAGAA
TATATACACATCTCGGCTGACAGTCTAAACAGAAAATGCTTTTATAAACA
ATGACCAAGCTCATCTTAGGCACTGTAGAAATATGGAAATTATGCATAAA
ATTTTTCTCTGTCATGGGGTGAAGAATAATCGATATCAGGGCCAAGAGGG
ATGATCCCATATGGATTGATAGAAGGATGGCTCCCATAGTAATGCCGCTT
GATGTGTTGCATATTCACAGTGCTAGACATGCTGGGAATCTGATATATGT
CTTTGGTGTAATTGAACAGATTTGGATATTCTCGTAATAGTTTCTTGTTG
CACTTGAAGTGAACTGCATAAACCTCATCAAATCTTAAGCGTGACAAACA
ACCGAATATCTGCTTCAGTCAGCCTGTTTCCACAAATGTATCGTTGCTTG
CCAAGTATCTTTTCACATTT
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