CX675395

Overview
NameCX675395
Unique NameCX675395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11227 contig Csv1_Contig11227:123..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675395 vs. ExPASy Swiss-Prot
Match: ARPC3_MOUSE (Actin-related protein 2/3 complex subunit 3 OS=Mus musculus GN=Arpc3 PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 5.570e-37
Identity = 78/163 (47.85%), Postives = 110/163 (67.48%), Query Frame = 3
Query:  147 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAF 629
            YHSS +D +  TK  G   LLPL+S  KGPAP   +D TDIVDEAI +F+ANVFF+N++IK+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P S++E E+ R YL+Q+R+ET  RL    + P +  P+KWW  F
Sbjct:    4 YHSSLMDPD--TKLIGNMALLPLRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPASKQEDEMMRAYLQQLRQETGLRLCEKVFDPQSDKPSKWWTCF 163          
BLAST of CX675395 vs. ExPASy Swiss-Prot
Match: ARPC3_HUMAN (Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 7.274e-37
Identity = 77/163 (47.24%), Postives = 110/163 (67.48%), Query Frame = 3
Query:  147 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAF 629
            YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++IK+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P +++E E+ R YL+Q+R+ET  RL    + P N  P+KWW  F
Sbjct:    4 YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCF 163          
BLAST of CX675395 vs. ExPASy Swiss-Prot
Match: ARPC3_BOVIN (Actin-related protein 2/3 complex subunit 3 OS=Bos taurus GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 7.274e-37
Identity = 77/163 (47.24%), Postives = 110/163 (67.48%), Query Frame = 3
Query:  147 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAF 629
            YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++IK+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P +++E E+ R YL+Q+R+ET  RL    + P N  P+KWW  F
Sbjct:    4 YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCF 163          
BLAST of CX675395 vs. ExPASy Swiss-Prot
Match: ARPC3_CAEEL (Probable actin-related protein 2/3 complex subunit 3 OS=Caenorhabditis elegans GN=arx-5 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.049e-30
Identity = 69/165 (41.82%), Postives = 100/165 (60.61%), Query Frame = 3
Query:  147 YHSSFVDEEGVTKACGCPL--LPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEK-VPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAY-RPNGTPNKWWLAF 629
            YHS F  E  V       +  LP++++ KGPAP ++QD  DI+DEA+T+F+ N+FFR F+IK  AD+ +IYL FYI   L++L+       G K +  L L   +P+PGE  FP   ++  PQS+ + +  R YL+QIR+E   RL  +A+  P   P+KWWL F
Sbjct:    4 YHSKFDTELKVLPLGNTNMGKLPIRTNFKGPAPQTNQD--DIIDEALTYFKPNIFFREFEIKGPADRTMIYLIFYITECLRKLQKSPNKIAGQKDLHALALSHLLPIPGENGFPLNSMYKAPQSKPDEDEMRAYLQQIRQEIGARLCDLAFPDPQDRPSKWWLCF 166          
BLAST of CX675395 vs. ExPASy Swiss-Prot
Match: ARPC3_SCHPO (Actin-related protein 2/3 complex subunit 3 OS=Schizosaccharomyces pombe GN=arc3 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.613e-30
Identity = 69/162 (42.59%), Postives = 94/162 (58.02%), Query Frame = 3
Query:  147 YHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAY-RPNGTPNKWWLAF 629
            YHSSF+    V       +LPLK+  +GPA  +D+ + DI+DE I  FRAN FFRNF+IK  AD+ LIY T +I+  L R+ G     +  + + +L LE   +PG   FP   L+A P S ++AE+ R YL Q R+E + RLLS  Y      P+KWW  F
Sbjct:    4 YHSSFLSLTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRNFEIKGPADRTLIYGTLFISECLGRVNG-LNYRDAERQLNSLALENFSIPGSAGFPLNALYAPPLSPQDAEIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWWTCF 164          
BLAST of CX675395 vs. ExPASy Swiss-Prot
Match: ARPC3_DICDI (Actin-related protein 2/3 complex subunit 3 OS=Dictyostelium discoideum GN=arcC PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.125e-29
Identity = 67/165 (40.61%), Postives = 95/165 (57.58%), Query Frame = 3
Query:  141 MVYHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRPN-GTPNKWWLAF 629
            MVYHS F DE    +  G  P+LPLK+  KGPAP  D +  DI+DEA+  F+AN+ FRNF+++ + D++LIYLT YI   L ++      A+  KA+  +  E+  +PGE  FP  GL  +P ++  A+  R Y  Q+R E   RL    Y  +    NKWW+ F
Sbjct:    1 MVYHSQFNDESAGFRLVGNVPILPLKTTHKGPAPKGDANSVDIIDEALDLFKANILFRNFEVQGNGDRVLIYLTLYITKCLLKI-APMNKADAEKALFLIAQEQFSIPGESAFPLGGLVTVPNTRDAADTLRQYFTQLRLELGVRLCQRVYAVDPSKANKWWICF 164          
BLAST of CX675395 vs. ExPASy Swiss-Prot
Match: ARPC3_YEAST (Actin-related protein 2/3 complex subunit 3 OS=Saccharomyces cerevisiae GN=ARC18 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.681e-25
Identity = 64/166 (38.55%), Postives = 95/166 (57.23%), Query Frame = 3
Query:  147 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP-QSQKEAELFRNYLKQIREETSGRLLSVAYRPNGT---PNKWWLAF 629
            YHS+F  +    +  G   LLPL +  +GPA  S+ D  DI+DE +  FRAN FF+NF+IKS AD++LIY   +IN  L  L+   +  E  K + N+ L+   +PG P FP   ++ +P Q     +L + Y++Q R+E + RLL   Y    +   P+K+WLAF
Sbjct:    4 YHSTFPVDPNTDRMVGNFALLPLNTKFRGPAYPSNSDY-DIIDECLDLFRANSFFKNFEIKSPADRVLIYGILFINDCLAHLKITTSFNEAVKVLTNVALDNFTLPGTPGFPLNNVYQVPVQDHNSMDLLKTYIQQFRQELAMRLLERVYSSTDSKEYPSKFWLAF 168          
BLAST of CX675395 vs. ExPASy Swiss-Prot
Match: ARPC3_ENTHI (Probable actin-related protein 2/3 complex subunit 3 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 48/121 (39.67%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  135 REMVYHSSFVDEEGVTKACGCPLLPLKSHIK-GPAPASDQDRTDIVDEAITFFRANVFFRNFDIK-SSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGL 491
            R   YHS  +D++ V KA   PL+  K+ +K  P      D  DIVDEAIT+++ANVF++N D+    ADKLL YL FY+   L    G RT  +  K   +L +E   +PG+  F   G+
Sbjct:    5 RSGAYHSE-LDKDIVQKAGNFPLMQFKTKVKVNPKFLLKGDDMDIVDEAITYYKANVFYKNLDMSICEADKLLAYLMFYLQSLLLTFTG-RTKVDCDKMAFSLAIENFGLPGDGKFCLGGI 123          
The following BLAST results are available for this feature:
BLAST of CX675395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ARPC3_MOUSE5.570e-3747.85Actin-related protein 2/3 complex subunit 3 OS=Mus... [more]
ARPC3_HUMAN7.274e-3747.24Actin-related protein 2/3 complex subunit 3 OS=Hom... [more]
ARPC3_BOVIN7.274e-3747.24Actin-related protein 2/3 complex subunit 3 OS=Bos... [more]
ARPC3_CAEEL5.049e-3041.82Probable actin-related protein 2/3 complex subunit... [more]
ARPC3_SCHPO8.613e-3042.59Actin-related protein 2/3 complex subunit 3 OS=Sch... [more]
ARPC3_DICDI1.125e-2940.61Actin-related protein 2/3 complex subunit 3 OS=Dic... [more]
ARPC3_YEAST1.681e-2538.55Actin-related protein 2/3 complex subunit 3 OS=Sac... [more]
ARPC3_ENTHI2.518e-1339.67Probable actin-related protein 2/3 complex subunit... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_62A02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A02-B4-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675395 ID=CX675395; Name=CX675395; organism=Citrus sinensis; type=EST; length=629bp
TGACACCTTCCAATCTTCGGATCCAACCAACAGAGAAAACATATCATTTT
TCTTTTGCCGAGAAATTGATACTTGCAGGAAAATTAGGGTTTTGCAAATT
GGGGCGAAAACAGATTCTTTTTAGCTCCAGTCATCGAGAAATGGTTTATC
ATTCGAGTTTTGTTGATGAGGAAGGAGTTACTAAAGCTTGTGGTTGCCCT
TTACTTCCTTTAAAAAGCCATATAAAGGGTCCTGCCCCTGCTTCTGATCA
AGATAGAACTGATATTGTTGATGAGGCAATCACGTTCTTCAGGGCCAATG
TGTTCTTTAGAAACTTTGATATTAAGAGCTCGGCTGATAAGCTGCTAATA
TATTTGACATTCTACATAAATGTGGCTTTGAAAAGACTTGAGGGTCGTAG
AACTTTGGCTGAGGGAACCAAGGCAATCATTAACTTGGGCTTGGAAAAGG
TTCCTGTGCCAGGAGAGCCTAATTTTCCTTTTCCAGGTCTCTTTGCTCTT
CCTCAATCTCAAAAGGAAGCAGAGCTATTCAGGAATTATCTGAAGCAGAT
AAGAGAGGAAACAAGTGGGAGACTGTTGAGTGTTGCATATAGACCTAACG
GCACACCAAATAAATGGTGGTTGGCATTT
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