CK937902

Overview
NameCK937902
Unique NameCK937902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937902_ssr4 microsatellite CK937902_ssr4:4..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK937902 vs. ExPASy Swiss-Prot
Match: NUC2_NEUCR (Ankyrin repeat protein nuc-2 OS=Neurospora crassa GN=nuc-2 PE=4 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.456e-13
Identity = 53/201 (26.37%), Postives = 105/201 (52.24%), Query Frame = 1
Query:  115 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSP--------------PPSHRHCVEA-EADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDKRTGGLLRLLFIQKVL-KQPFFTTEVVSKLIKECESTIAQV 669
            MKFGK++Q++  E +P +   F++YK LKKL+  +S++P              P   +  ++A +A F + ++ E+DK NA +++KE +  I+ K L  + + +    G    R ++         +++    F  ++  L  +  IN T  +KILKK+DK      + L++ +V+ K+P F   V+S+L  +  +++ ++
Sbjct:    1 MKFGKQIQKRQLE-VPEYAASFVNYKALKKLIKKLSATPILPPQTDLRRAPGEPLDTQSALQANKATFFFQIDRELDKVNACYVQKEAELKIRLKTLLDKKKALRSRSGGTSRRSTK------FTTLQEGFQQFVNDLNKLQQFVEINGTAFSKILKKWDKTAKSKTKELYLSRVVEKRPAFNPTVISELSDQATTSLQEL 194          
BLAST of CK937902 vs. ExPASy Swiss-Prot
Match: XPR1_XENTR (Xenotropic and polytropic retrovirus receptor 1 homolog OS=Xenopus tropicalis GN=xpr1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.587e-12
Identity = 57/227 (25.11%), Postives = 98/227 (43.17%), Query Frame = 1
Query:  115 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPS--------------ETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDK----RTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVDEKEIGRREPTIR 717
            MKF + L   I    P WR +++ Y+  K+++       P           R+  + E  F      E+ K N F+ EK  +   +   LQ  LQ  +D    + A P               E     ++ +++     F+  ++LL NY N+N+TG  KILKK+DK      G   R+  ++     PF+T + +++LI E E+ +      +E E G R+  ++
Sbjct:    1 MKFAEHLSAHIT---PEWRKQYIQYEAFKEMLYAAQDQAPSIEVTDEDTVKRYYAKFEEIFFQTCEKELAKINTFYSEKLAEAQRRSATLQNELQSSLDAQRESSAIPGLRQRRKAVFALTHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHVEVA---PFYTCKKINQLISETETVV-----TNELESGDRQKAMK 216          
BLAST of CK937902 vs. ExPASy Swiss-Prot
Match: XPR1_XENLA (Xenotropic and polytropic retrovirus receptor 1 homolog OS=Xenopus laevis GN=xpr1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-11
Identity = 56/227 (24.67%), Postives = 97/227 (42.73%), Query Frame = 1
Query:  115 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGARPS--------------ETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDK----RTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVDEKEIGRREPTIR 717
            MKF + L   I    P WR +++ Y+  K+++       P           R+  + E  F      E+ K N F+ EK  +   +   LQ  LQ  +D    +   P               E     ++ +++     F+  ++LL NY N+N+TG  KILKK+DK      G   R+  ++     PF+T + +++LI E E+ +      +E E G R+  ++
Sbjct:    1 MKFTEHLSAHIT---PEWRKQYIQYEAFKEMLYAAQDQAPSIEVTDEDTVKRYYAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRSATLQNELQSSLDAQRESSVVPGLRQRRKAVFALTHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHVEVA---PFYTCKKINQLISETETVV-----TNELESGDRQKAMK 216          
BLAST of CK937902 vs. ExPASy Swiss-Prot
Match: XPR1_DANRE (Xenotropic and polytropic retrovirus receptor 1 homolog OS=Danio rerio GN=xrp1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 55/207 (26.57%), Postives = 92/207 (44.44%), Query Frame = 1
Query:  115 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEK----EEDFIIKRKELQQRLQRVIDTWGPNGARPSET--------NCKE-DMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDK----RTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTI 660
            MKF + L   I    P WR +++ Y+  K+++       P           R+  + E  F      E+ K N F+ EK    +  F   + ELQ  L    ++    G R   T         CK  ++ +++     F+  ++LL NY N+N+TG  KILKK+DK      G   R+  ++     PF+T + +++LI E E+ +
Sbjct:    1 MKFTEHLSAHIT---PEWRKQYIQYEAFKEMLYSAQDQAPSIEVTDEDTVKRYYAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQRESSRAAGLRHRRTVFHLSQQERCKHRNIKDLQLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKIFETSRGADWRVAHVEVA---PFYTCKKITQLISETETLV 201          
BLAST of CK937902 vs. ExPASy Swiss-Prot
Match: XPR1_MUSMC (Xenotropic and polytropic retrovirus receptor 1 homolog OS=Mus musculus castaneus GN=Xpr1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 60/227 (26.43%), Postives = 100/227 (44.05%), Query Frame = 1
Query:  115 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQRVIDTWGPNGA--------RPSETNCKEDMAEIR--KDIV----NFHGEMVLLVNYSNINYTGLAKILKKYDK----RTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVDEKEIGRREPTIR 717
            MKF + L   I    P WR +++ Y+  K ++       P           R+  + E  F      E+ K N F+ EK  +   +   LQ  LQ  +D    + A        +P      E+  + R  KD+      F+  ++LL NY N+N+TG  KILKK+DK      G   R++ ++     PF+T + +++LI E E+ +      +E E G R+  ++
Sbjct:    1 MKFAEHLSAHIT---PEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDVQKESSAVTALRQRRKPVFHLSHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVIHVEVA---PFYTCKKINQLISETEAVV-----TNELEDGDRQKAMK 216          
BLAST of CK937902 vs. ExPASy Swiss-Prot
Match: XPR1_MUSPA (Xenotropic and polytropic retrovirus receptor 1 homolog OS=Mus pahari GN=Xpr1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 57/227 (25.11%), Postives = 98/227 (43.17%), Query Frame = 1
Query:  115 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEK----EEDFIIKRKELQQRLQRVIDTWGPNGARP----------SETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDK----RTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVDEKEIGRREPTIR 717
            MKF + L   I    P WR +++ Y+  K ++       P           R+  + E  F      E+ K N F+ EK    +  F   + ELQ  L    ++ G    R            E     ++ +++     F+  ++LL NY N+N+TG  KILKK+DK      G   R++ ++     PF+T + +++LI E E+ +      +E E G R+  ++
Sbjct:    1 MKFAEHLSAHIT---PEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDVQKESSGVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVIHVEVA---PFYTCKKINQLISETEAVV-----TNELEDGDRQKAMK 216          
BLAST of CK937902 vs. ExPASy Swiss-Prot
Match: XPR1_MUSDU (Xenotropic and polytropic retrovirus receptor 1 OS=Mus dunni GN=Xpr1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 57/227 (25.11%), Postives = 98/227 (43.17%), Query Frame = 1
Query:  115 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEK----EEDFIIKRKELQQRLQRVIDTWGPNGARP----------SETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDK----RTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVDEKEIGRREPTIR 717
            MKF + L   I    P WR +++ Y+  K ++       P           R+  + E  F      E+ K N F+ EK    +  F   + ELQ  L    ++ G    R            E     ++ +++     F+  ++LL NY N+N+TG  KILKK+DK      G   R++ ++     PF+T + +++LI E E+ +      +E E G R+  ++
Sbjct:    1 MKFAEHLSAHIT---PEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDVQKESSGVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVIHVEVA---PFYTCKKINQLISETEAVV-----TNELEDGDRQKAMK 216          
BLAST of CK937902 vs. ExPASy Swiss-Prot
Match: XPR1_MOUSE (Xenotropic and polytropic retrovirus receptor 1 OS=Mus musculus GN=Xpr1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 57/227 (25.11%), Postives = 98/227 (43.17%), Query Frame = 1
Query:  115 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEK----EEDFIIKRKELQQRLQRVIDTWGPNGARP----------SETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDK----RTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVDEKEIGRREPTIR 717
            MKF + L   I    P WR +++ Y+  K ++       P           R+  + E  F      E+ K N F+ EK    +  F   + ELQ  L    ++ G    R            E     ++ +++     F+  ++LL NY N+N+TG  KILKK+DK      G   R++ ++     PF+T + +++LI E E+ +      +E E G R+  ++
Sbjct:    1 MKFAEHLSAHIT---PEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDVQKESSGVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVIHVEVA---PFYTCKKINQLISETEAVV-----TNELEDGDRQKAMK 216          
BLAST of CK937902 vs. ExPASy Swiss-Prot
Match: XPR1_HUMAN (Xenotropic and polytropic retrovirus receptor 1 OS=Homo sapiens GN=XPR1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 57/227 (25.11%), Postives = 97/227 (42.73%), Query Frame = 1
Query:  115 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSH--------RHCVEAEADFVYLLNHEIDKFNAFFMEK----EEDFIIKRKELQQRLQRVIDTWGPNGARP----------SETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDK----RTGGLLRLLFIQKVLKQPFFTTEVVSKLIKECESTIAQVFPVDEKEIGRREPTIR 717
            MKF + L   I    P WR +++ Y+  K ++       P           R+  + E  F      E+ K N F+ EK    +  F   + ELQ  L    ++ G    R            E     ++ +++     F+  ++LL NY N+N+TG  KILKK+DK      G   R+  ++     PF+T + +++LI E E+ +      +E E G R+  ++
Sbjct:    1 MKFAEHLSAHIT---PEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHVEVA---PFYTCKKINQLISETEAVV-----TNELEDGDRQKAMK 216          
BLAST of CK937902 vs. ExPASy Swiss-Prot
Match: VTC4_YEAST (Vacuolar transporter chaperone 4 OS=Saccharomyces cerevisiae GN=VTC4 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 58/211 (27.49%), Postives = 106/211 (50.24%), Query Frame = 1
Query:  115 MKFGKRLQQQIEETLPGWRDKFLSYKRLKKLVNLISSSPPPSHRHCVEAEADFVYLLNHEIDKFNAFFMEKEEDFIIKRKELQQRLQ---RVIDTWGPNGARPSETNCKEDMAEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDKRTGGLLRLLFIQKVLKQPFFT---TEVVSKL--IKECESTIAQVFPVDEKEIGRREPTIRVT 723
            MKFG+ L + +   +  +   ++SY  LK    L  +    + +   E E DF+  L  E+DK   F   K  +   + KE+Q+++Q   R++D+  P      E   +E++++I  D+ +       L  +S +NYTG  KI+KK+DK+TG +L+ +F  ++  +PFF     E+V K+  + +   T  +    D    G+++  +R T
Sbjct:    1 MKFGEHLSKSL---IRQYSYYYISYDDLK--TELEDNLSKNNGQWTQELETDFLESLEIELDKVYTFCKVKHSEVFRRVKEVQEQVQHTVRLLDSNNPPTQLDFEI-LEEELSDIIADVHD-------LAKFSRLNYTGFQKIIKKHDKKTGFILKPVFQVRLDSKPFFKENYDELVVKISQLYDIARTSGRPIKGDSSAGGKQQNFVRQT 198          
The following BLAST results are available for this feature:
BLAST of CK937902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NUC2_NEUCR1.456e-1326.37Ankyrin repeat protein nuc-2 OS=Neurospora crassa ... [more]
XPR1_XENTR3.587e-1225.11Xenotropic and polytropic retrovirus receptor 1 ho... [more]
XPR1_XENLA1.044e-1124.67Xenotropic and polytropic retrovirus receptor 1 ho... [more]
XPR1_DANRE1.780e-1126.57Xenotropic and polytropic retrovirus receptor 1 ho... [more]
XPR1_MUSMC2.325e-1126.43Xenotropic and polytropic retrovirus receptor 1 ho... [more]
XPR1_MUSPA3.965e-1125.11Xenotropic and polytropic retrovirus receptor 1 ho... [more]
XPR1_MUSDU3.965e-1125.11Xenotropic and polytropic retrovirus receptor 1 OS... [more]
XPR1_MOUSE3.965e-1125.11Xenotropic and polytropic retrovirus receptor 1 OS... [more]
XPR1_HUMAN3.965e-1125.11Xenotropic and polytropic retrovirus receptor 1 OS... [more]
VTC4_YEAST3.965e-1127.49Vacuolar transporter chaperone 4 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004480_E03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937902 ID=CK937902; Name=CK937902; organism=Citrus sinensis; type=EST; length=846bp
GGGGTGTGTGTGTGTGTGTGTGTGAAATATGATATGATGATGACGACGAT
GATGCCCTTGATTCGTCCCAATTGATCTTGCCTTTGATTTTGAATCTTGA
GAGACCGAGAGATCATGAAGTTCGGCAAGAGATTGCAGCAACAGATTGAA
GAAACGCTGCCCGGTTGGCGTGACAAATTTTTATCCTATAAAAGGTTGAA
GAAGCTTGTCAATTTGATCTCTTCTTCGCCTCCTCCATCGCATCGGCACT
GTGTCGAAGCTGAGGCTGACTTCGTTTACTTGCTGAACCACGAGATCGAC
AAGTTCAATGCTTTTTTCATGGAGAAAGAAGAGGATTTCATCATCAAGCG
AAAGGAATTACAACAGAGGCTGCAGAGGGTGATTGATACATGGGGACCAA
ACGGAGCTCGACCTTCAGAGACAAATTGTAAAGAGGATATGGCAGAGATT
AGGAAAGATATTGTCAATTTCCATGGCGAAATGGTGTTGTTAGTCAATTA
CAGCAATATCAATTACACAGGTTTGGCTAAGATATTGAAGAAGTATGATA
AGAGAACAGGCGGATTACTGCGCTTGTTATTCATTCAAAAGGTGTTGAAG
CAACCCTTTTTCACCACTGAGGTTGTTTCGAAACTGATCAAGGAATGCGA
AAGCACAATAGCCCAAGTGTTTCCGGTTGACGAAAAGGAAATAGGAAGAA
GAGAACCAACAATAAGAGTTACAGGAGAAGGAGTTTTCAGAAACACGGTT
GCAGCTCTATTGACAATGCAAGAAATCAGAAGTGGAAGCTCTACACGAAG
TCAGTTTTCGCTGCCTCCTCTCGACTTGTCGGATTCTGAGTTTATT
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